Factsheet for TraesCS5D01G328300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G322000.2	Wheat	cytosol	99.89	99.89
TraesCS5A01G321500.1	Wheat	cytosol	99.55	99.55
HORVU5Hr1G081930.2	Barley	cytosol, plastid	98.87	96.9
Os09t0533400-01	Rice	mitochondrion	31.6	93.96
EER99247	Sorghum	plastid	93.0	93.11
Zm00001d021301_P002	Maize	peroxisome	92.44	84.69
GSMUA_Achr1P07700_001	Banana	cytosol, mitochondrion, peroxisome, plastid	83.07	82.79
VIT_02s0012g00310.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	81.6	81.42
PGSC0003DMT400004645	Potato	cytosol, mitochondrion, peroxisome, plastid	79.8	80.62
Solyc08g077440.2.1	Tomato	plastid	79.35	80.16
GSMUA_Achr2P03430_001	Banana	mitochondrion	80.25	80.16
KRH77266	Soybean	mitochondrion	80.14	79.86
KRH04278	Soybean	cytosol, mitochondrion, peroxisome, plastid	79.35	79.35
KRH57559	Soybean	cytosol, mitochondrion, peroxisome, plastid	79.23	79.32
CDX77732	Canola	mitochondrion, peroxisome	78.33	78.24
Bra024968.1-P	Field mustard	mitochondrion	78.22	78.13
AT5G47040.1	Thale cress	mitochondrion, peroxisome	78.1	77.93
CDY33510	Canola	mitochondrion, peroxisome	77.65	77.56
Zm00001d006214_P002	Maize	plasma membrane	74.61	65.32
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	32.84	29.66

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.1480	MapMan:19.4.2.4	Gene3D:3.30.230.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176
GO:GO:0004252	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006508	GO:GO:0006515	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043
GO:GO:0016560	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0043233	GO:GO:0048527
InterPro:IPR003111	InterPro:IPR008269	InterPro:IPR014721	InterPro:Lon_Prtase	InterPro:Lon_bac/euk-typ	InterPro:Lon_proteolytic
InterPro:Lon_substr-bd	InterPro:Lonp2_euk	HAMAP:MF_03121	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02190
PFAM:PF05362	PIRSF:PIRSF001174	PRINTS:PR00830	ScanProsite:PS01046	PFscan:PS51786	PFscan:PS51787
PANTHER:PTHR10046	PANTHER:PTHR10046:SF24	InterPro:PUA-like_sf	InterPro:Peptidase_S16_AS	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00382	SMART:SM00464	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF88697	TIGRFAMs:TIGR00763
EnsemblPlantsGene:TraesCS5D01G328300	EnsemblPlants:TraesCS5D01G328300.2	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:420873965..420884117

Molecular Weight (calculated)

97504.2 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.212

Length

886 amino acids

Sequence
(BLAST)

001: MADAPVELPG RLAILPFRNK VLLPGAIVRI RCTNPSSVKL VEQELWQRED KGLIGVLPVR DSEAAAVGSI LSPGVGSDSG EGGRRSPGGS GGESTKQDAK
101: SGKEPIHWHS RGVAARALHL SRGVEKPSGR VTYIVVLEGL CRFSVEELNA RGSYHVARVS RLDMTKTELE QAEQDPDLIA LSRQFKATAM ELISVLEQKQ
201: KTVGRTKVLL ETVPVYRLAD IFVASFEISF EEQLAMLDSV DLKVRLSKAT ELVDRHLQSI LVAEKITQKV EGQLSKSQKE FLLRQQMRAI KDELGDNDDD
301: EDDIAALERK MQNAGMPANI WKHAQRELRR LRKMQPQQPG YSSSRAYLEL IADLPWQKVS EERELDLRAA KESLDRDHYG LTKVKQRIIE YLAVRKLKPD
401: ARGPVLCFVG PPGVGKTSLA TSIAKALNRK FIRISLGGVK DEADIRGHRR TYIGSMPGRL IDGLKRVSVN NPVMLLDEID KTGSDVRGDP ASALLEVLDP
501: EQNKTFNDHY LNVPFDLSKV VFVATANRMQ PIPPALLDRM EVIELPGYTP EEKLKIAMKH LLPRVLEQHG LSSAYLQIPE AVVKLIIERY TREAGVRNLE
601: RNLAALARAA AVKVAELDST LRLGKEMQPI TTTLLDSRLA DGGEVEMEVI PMGQDISNTY ENPSPMIVDE AMLEKVLGPP RFDDREAADR VSSPGVSVGL
701: VWTSFGGEVQ FVEATAMAGK GDLHLTGQLG DVIKESAQLA LTWVRARSAD LNLSPTSDIN ILESRDIHIH FPAGAVPKDG PSAGVTLVTS LVSLFSNRKV
801: RADTAMTGEM TLRGLVLPVG GVKDKVLAAH RYGIKRVILP ERNLKDLAEI PAPILAGIEI LLVKRIEEVL GHAFENGFPL RLHSSL

Best Arabidopsis Sequence Match ( AT5G47040.1 )
(BLAST)

001: MAETVELPSR LAILPFRNKV LLPGAIIRIR CTSHSSVTLV EQELWQKEEK GLIGILPVRD DAEGSSIGTM INPGAGSDSG ERSLKFLVGT TDAQKSDAKD
101: QQDLQWHTRG VAARALHLSR GVEKPSGRVT YVVVLEGLSR FNVQELGKRG PYSVARITSL EMTKAELEQV KQDPDFVALS RQFKTTAMEL VSVLEQKQKT
201: GGRTKVLLET VPIHKLADIF VASFEMSFEE QLSMLDSVDL KVRLSKATEL VDRHLQSIRV AEKITQKVEG QLSKSQKEYL LRQQMRAIKE ELGDNDDDED
301: DVAALERKMQ AAGMPSNIWK HAQRELRRLK KMQPQQPGYN SSRVYLELLA DLPWDKASEE HELDLKAAKE RLDSDHYGLA KVKQRIIEYL AVRKLKPDAR
401: GPVLCFVGPP GVGKTSLASS IAAALGRKFV RLSLGGVKDE ADIRGHRRTY IGSMPGRLID GLKRVGVCNP VMLLDEIDKT GSDVRGDPAS ALLEVLDPEQ
501: NKSFNDHYLN VPYDLSKVVF VATANRVQPI PPPLLDRMEL IELPGYTQEE KLKIAMRHLI PRVLDQHGLS SEFLKIPEAM VKNIIQRYTR EAGVRSLERN
601: LAALARAAAV MVAEHEQSLP LSKDVQKLTS PLLNGRMAEG GEVEMEVIPM GVNDHEIGGT FQSPSALVVD ETMLEKILGP PRFDDSEAAD RVASAGVSVG
701: LVWTTFGGEV QFVEATSMVG KGEMHLTGQL GDVIKESAQL ALTWVRARAS DFKLALAGDM NVLDGRDIHI HFPAGAVPKD GPSAGVTLVT ALVSLFSQKR
801: VRADTAMTGE MTLRGLVLPV GGIKDKILAA HRYGIKRVIL PQRNSKDLVE VPAAVLSSLE VILAKRMEDV LENAFEGGCP WRNNYSKL

Arabidopsis Description

LON2Lon protease homolog 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O64948]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.