Factsheet for Solyc08g077440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004645	Potato	cytosol, mitochondrion, peroxisome, plastid	98.75	98.75
VIT_02s0012g00310.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	88.03	86.94
KRH77266	Soybean	mitochondrion	85.52	84.36
KRH04278	Soybean	cytosol, mitochondrion, peroxisome, plastid	84.61	83.75
KRH57559	Soybean	cytosol, mitochondrion, peroxisome, plastid	84.15	83.39
Bra024968.1-P	Field mustard	mitochondrion	82.67	81.74
CDX77732	Canola	mitochondrion, peroxisome	82.67	81.74
AT5G47040.1	Thale cress	mitochondrion, peroxisome	82.67	81.64
CDY33510	Canola	mitochondrion, peroxisome	81.87	80.95
EER99247	Sorghum	plastid	81.53	80.79
GSMUA_Achr1P07700_001	Banana	cytosol, mitochondrion, peroxisome, plastid	81.87	80.76
TraesCS5B01G322000.2	Wheat	cytosol	80.27	79.46
TraesCS5D01G328300.2	Wheat	plastid	80.16	79.35
TraesCS5A01G321500.1	Wheat	cytosol	80.16	79.35
GSMUA_Achr2P03430_001	Banana	mitochondrion	79.25	78.35
Os09t0533400-01	Rice	mitochondrion	26.45	77.85
HORVU5Hr1G081930.2	Barley	cytosol, plastid	80.16	77.77
Zm00001d021301_P002	Maize	peroxisome	81.41	73.84
Zm00001d006214_P002	Maize	plasma membrane	66.36	57.51
Solyc10g024320.1.1	Tomato	cytosol	26.45	39.26
Solyc10g024310.1.1	Tomato	mitochondrion, vacuole	3.42	25.64
Solyc10g024300.1.1	Tomato	cytosol	3.76	14.22

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.1480	MapMan:19.4.2.4	Gene3D:2.30.130.40	Gene3D:3.30.230.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004176	GO:GO:0004252	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005782	GO:GO:0006508	GO:GO:0006515
GO:GO:0006625	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008236	GO:GO:0009056	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016485
GO:GO:0016558	GO:GO:0016560	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0030163
GO:GO:0040007	GO:GO:0043233	GO:GO:0048527	InterPro:IPR003111	InterPro:IPR008269	InterPro:IPR014721
UniProt:K4CNA3	InterPro:Lon_Prtase	InterPro:Lon_bac/euk-typ	InterPro:Lon_proteolytic	InterPro:Lon_substr-bd	InterPro:Lonp2_euk
HAMAP:MF_03121	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02190	PFAM:PF05362	PIRSF:PIRSF001174
PRINTS:PR00830	ScanProsite:PS01046	PFscan:PS51786	PFscan:PS51787	PANTHER:PTHR10046	PANTHER:PTHR10046:SF24
InterPro:PUA-like_sf	InterPro:Peptidase_S16_AS	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	MEROPS:S16.003	SMART:SM00382
SMART:SM00464	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF88697	EnsemblPlantsGene:Solyc08g077440.2	EnsemblPlants:Solyc08g077440.2.1
TIGRFAMs:TIGR00763	UniParc:UPI000276C49A	SEG:seg	:	:	:

Description

Lon protease homolog 2, peroxisomal [Source:Projected from Arabidopsis thaliana (AT5G47040) UniProtKB/Swiss-Prot;Acc:O64948]

Coordinates

chr8:-:61326655..61336566

Molecular Weight (calculated)

97180.0 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.210

Length

877 amino acids

Sequence
(BLAST)

001: MAESVELPSR LAILPFRNKV LLPGAIIRIR CTSPSSVKLV EQELWQREEK GLIGILPVRD SAESATSGTA VSSGMGGETS DSHKLDSKNQ QEVIHWHDRG
101: VAARALHLSR GVEKPSGRVT YIVVLEGLCR FNVQELSTRG TYYTARITSL DMTKGEMELI EQDQEFVALS RQFKATAMEL ISILEQKQKT GGRTKVLLET
201: VPVHKLADIF VASFEISFEE QLSMLDSVDV KVRLSKATEL VDRHLQSIRV AEKITQKVEG QLSKSQKEFL LRQQMKAIKE ELGDNDDEED DLVALERKMQ
301: GAGMPASIWK HALRELRRLK KMQPQQPGYN SSRVYLELLA DLPWEKASPE LELDLKAAKE RLDADHYGLL KVKQRIIEYL AVRKLKPDAR GPVLCFVGPP
401: GVGKTSLASS IAAALGRKFI RISLGGVKDE ADIRGHRRTY IGSMPGRLVD GLKRVGVHNP VMLLDEIDKT GSDVRGDPAS ALLEVLDPEQ NKTFNDHYLN
501: VPFDLSKVIF VATANRMQPI PPPLLDRMEV IELPGYTPEE KLKIAIRHLI PRVLDQHGLS SDFLQIPEDM VKLVIQRYTR EAGVRNLERN LAALARAAAV
601: KVAEQEHLEP FSKDVQRLSS PLLDDKLAET AEVEMEVIPM GVNNHDISSA FRVASPMVVD EPMVEKVLGP PRYDDRETAE RVANPGVSVG LVWTAFGGEV
701: QFVEATAMVG KGDLHLTGQL GDVIKESAQI ALTWVRARAT ELKLAISEET NLLEGRDIHI HFPAGAVPKD GPSAGVTLVT SLVSLFSKKR VRADTAMTGE
801: MTLRGMVLPV GGVKDKVLAA HRYGIKRVIL PERNLKDLVE VPATVLSSLE IILAKRVEDV LDQAFEGGCP WRQQSKL

Best Arabidopsis Sequence Match ( AT5G47040.1 )
(BLAST)

001: MAETVELPSR LAILPFRNKV LLPGAIIRIR CTSHSSVTLV EQELWQKEEK GLIGILPVRD DAEGSSIGTM INPGAGSDSG ERSLKFLVGT TDAQKSDAKD
101: QQDLQWHTRG VAARALHLSR GVEKPSGRVT YVVVLEGLSR FNVQELGKRG PYSVARITSL EMTKAELEQV KQDPDFVALS RQFKTTAMEL VSVLEQKQKT
201: GGRTKVLLET VPIHKLADIF VASFEMSFEE QLSMLDSVDL KVRLSKATEL VDRHLQSIRV AEKITQKVEG QLSKSQKEYL LRQQMRAIKE ELGDNDDDED
301: DVAALERKMQ AAGMPSNIWK HAQRELRRLK KMQPQQPGYN SSRVYLELLA DLPWDKASEE HELDLKAAKE RLDSDHYGLA KVKQRIIEYL AVRKLKPDAR
401: GPVLCFVGPP GVGKTSLASS IAAALGRKFV RLSLGGVKDE ADIRGHRRTY IGSMPGRLID GLKRVGVCNP VMLLDEIDKT GSDVRGDPAS ALLEVLDPEQ
501: NKSFNDHYLN VPYDLSKVVF VATANRVQPI PPPLLDRMEL IELPGYTQEE KLKIAMRHLI PRVLDQHGLS SEFLKIPEAM VKNIIQRYTR EAGVRSLERN
601: LAALARAAAV MVAEHEQSLP LSKDVQKLTS PLLNGRMAEG GEVEMEVIPM GVNDHEIGGT FQSPSALVVD ETMLEKILGP PRFDDSEAAD RVASAGVSVG
701: LVWTTFGGEV QFVEATSMVG KGEMHLTGQL GDVIKESAQL ALTWVRARAS DFKLALAGDM NVLDGRDIHI HFPAGAVPKD GPSAGVTLVT ALVSLFSQKR
801: VRADTAMTGE MTLRGLVLPV GGIKDKILAA HRYGIKRVIL PQRNSKDLVE VPAAVLSSLE VILAKRMEDV LENAFEGGCP WRNNYSKL

Arabidopsis Description

LON2Lon protease homolog 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O64948]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.