Factsheet for TraesCS6B01G052300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G051800.1	Wheat	mitochondrion	93.7	93.89
TraesCS6A01G037400.1	Wheat	endoplasmic reticulum	93.5	93.69
EES04353	Sorghum	plastid	80.12	78.57
Zm00001d014984_P001	Maize	endoplasmic reticulum	79.33	78.25
HORVU6Hr1G006810.7	Barley	mitochondrion	90.75	73.52
Os02t0114400-00	Rice	mitochondrion	32.68	72.81
CDY71876	Canola	cytosol, extracellular, mitochondrion	19.49	60.37
GSMUA_Achr1P06780_001	Banana	plasma membrane	47.83	59.27
KRH48117	Soybean	plasma membrane	54.92	55.91
KRH64978	Soybean	plasma membrane	54.72	55.6
TraesCS4B01G282100.1	Wheat	peroxisome	54.53	55.4
VIT_15s0046g02400.t01	Wine grape	plasma membrane	54.33	55.09
PGSC0003DMT400000152	Potato	plasma membrane	54.13	54.89
Solyc01g094700.2.1	Tomato	plasma membrane	53.94	54.69
Bra037338.1-P	Field mustard	plasma membrane	53.35	54.2
Bra033249.1-P	Field mustard	plasma membrane	50.0	53.93
TraesCS3B01G400000.1	Wheat	golgi	52.76	53.92
AT1G01610.1	Thale cress	plasma membrane	53.15	53.68
Bra032643.1-P	Field mustard	plasma membrane	52.56	53.29
AT4G00400.1	Thale cress	cytosol, golgi, plasma membrane	52.36	53.2
CDY38016	Canola	plasma membrane	52.76	53.07
CDY15166	Canola	plasma membrane	52.36	52.88
CDX90045	Canola	plasma membrane	52.36	52.88
TraesCS1B01G287900.1	Wheat	golgi, peroxisome, plasma membrane	50.79	50.29
TraesCS1B01G149600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.2	49.9
TraesCS4B01G066500.1	Wheat	plasma membrane	49.21	45.87
TraesCS2B01G319100.1	Wheat	cytosol, peroxisome, plasma membrane	36.02	45.64
TraesCS1B01G292200.1	Wheat	plasma membrane	43.7	43.11
TraesCS5B01G092200.1	Wheat	plasma membrane	40.94	39.77
TraesCS3B01G371300.1	Wheat	mitochondrion, plasma membrane, plastid	40.75	38.62
TraesCS3B01G257000.2	Wheat	mitochondrion, plasma membrane	39.37	37.31
TraesCS7B01G419500.1	Wheat	mitochondrion, plasma membrane	38.19	36.53
TraesCS1B01G233800.1	Wheat	plastid	35.04	36.33
TraesCS2B01G158000.1	Wheat	mitochondrion	37.6	36.17
TraesCS5B01G511500.1	Wheat	mitochondrion	38.19	34.34
TraesCS3B01G173200.1	Wheat	mitochondrion	35.63	33.64

Protein Annotations

Gene3D:1.20.1440.100	Gene3D:3.40.50.1000	MapMan:5.2.1.2.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
PFAM:PF01553	PFAM:PF12710	PANTHER:PTHR15486	PANTHER:PTHR15486:SF27	InterPro:Plipid/glycerol_acylTrfase	SMART:SM00563
SUPFAM:SSF56784	SUPFAM:SSF69593	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G052300	EnsemblPlants:TraesCS6B01G052300.1	TIGR:cd06551
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:31574555..31578063

Molecular Weight (calculated)

54394.2 Da

IEP (calculated)

9.509

GRAVY (calculated)

0.239

Length

508 amino acids

Sequence
(BLAST)

001: MAPRPGTAAM SRFPPVSSYD AAARERRTAA SDLDGTLLAS SSAFPYYFLV ALEAGGYLRA LALLLLAPFI LLLYTAVSEP AAIGLLVFAT FTGLRVRDVE
101: AVARGVLPRH YAAGVRADSW EVFRGCGAGR RVVVTASPAV MVSPFVREFL GAEVAGTELG IFCGRFTGLI SGGVLVAGRK REVVERLFAG GDMPDVGLGD
201: RESDHDFMAI CKEAYMVPTN KRAPRAAPDA LLSRVVFHDG RLVRRPDPAH ALFALAYLPV GFALAVLRVL ISLSVLRHLV RHTYRLTGIR LAVRGTAPPA
301: PRDGSPGSLL VCNHRTALDP IIVAVALGRP VTCVTYSASR LSMAISPIPA VALARDREAD AARIAALLSS GRDVVVCPEG TTCREPCLLR FLALFAELTD
401: RIVPVALEAS QSTYYGSTAR GWKALDPWFF YMNPRPGYKV TFLPALRPEE TCGAGGRSAV DVANHVQAVL AKELGYRCTT LTRKDKYMKL AGNDGTVATA
501: GDDVYKAN

Best Arabidopsis Sequence Match ( AT1G01610.1 )
(BLAST)

001: MSPAKKSRSF PPISECKSRE YDSIAADLDG TLLLSRSSFP YFMLVAIEAG SLFRGLILLL SLPIVIIAYL FVSESLGIQI LIFISFAGIK IKNIELVSRA
101: VLTRFYAADV RKDSFEVFDK CKKRKVVVTA NPIVMVEPFV KDYLGGDKVL GTEIEVNPKT MKATGFVKKP GVLVGDLKRL AILKEFGDDS PDLGLGDRTS
201: DHDFMSICKE GYMVHETKSA TTVPIESLKN RIIFHDGRLV QRPTPLNALI IYLWLPFGFM LSVFRVYFNL PLPERFVRYT YEILGIHLTI RGHRPPPPSP
301: GKPGNLYVLN HRTALDPIII AIALGRKITC VTYSVSRLSL MLSPIPAVAL TRDRVADAAR MRQLLEKGDL VICPEGTTCR EPYLLRFSAL FAELSDRIVP
401: VAMNCKQGMF NGTTVRGVKF WDPYFFFMNP RPSYEATFLD RLPEEMTVNG GGKTPFEVAN YVQKVIGGVL GFECTELTRK DKYLLLGGND GKVESINKTK
501: SME

Arabidopsis Description

GPAT4GPAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178W9F8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.