Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68560.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G038300.1 | Wheat | golgi | 96.94 | 97.05 |
| TraesCS3B01G041700.1 | Wheat | unclear | 95.47 | 95.87 |
| HORVU3Hr1G003540.2 | Barley | extracellular, vacuole | 95.26 | 94.76 |
| EES02554 | Sorghum | extracellular, vacuole | 81.98 | 83.84 |
| Zm00001d039994_P001 | Maize | extracellular | 81.66 | 83.6 |
| Os01t0130400-01 | Rice | extracellular | 78.93 | 80.36 |
| GSMUA_Achr1P20950_001 | Banana | golgi, vacuole | 61.01 | 73.2 |
| VIT_01s0011g03450.t01 | Wine grape | extracellular | 65.44 | 67.21 |
| Solyc04g007150.2.1 | Tomato | extracellular | 42.15 | 66.78 |
| KRH35960 | Soybean | endoplasmic reticulum | 63.54 | 65.19 |
| KRH75375 | Soybean | endoplasmic reticulum | 63.44 | 64.87 |
| KRH45278 | Soybean | endoplasmic reticulum | 63.22 | 64.79 |
| AT1G68560.1 | Thale cress | extracellular, vacuole | 62.07 | 64.37 |
| CDY04236 | Canola | extracellular, vacuole | 58.8 | 64.36 |
| Bra004031.1-P | Field mustard | extracellular, vacuole | 62.38 | 64.07 |
| CDY07378 | Canola | extracellular, vacuole | 59.33 | 64.05 |
| CDY38593 | Canola | extracellular, vacuole | 58.38 | 63.82 |
| PGSC0003DMT400041054 | Potato | endoplasmic reticulum, extracellular, vacuole | 62.28 | 63.55 |
| CDX96008 | Canola | extracellular, vacuole | 58.06 | 63.41 |
| Bra035407.1-P | Field mustard | extracellular, vacuole | 61.85 | 63.32 |
| CDX81531 | Canola | extracellular, vacuole | 58.8 | 63.27 |
| CDY44885 | Canola | extracellular, vacuole | 58.8 | 63.27 |
| Bra004319.1-P | Field mustard | extracellular, vacuole | 61.43 | 62.96 |
| PGSC0003DMT400037696 | Potato | extracellular | 60.7 | 62.07 |
| Solyc05g009470.2.1 | Tomato | extracellular | 60.59 | 61.96 |
| AT3G45940.1 | Thale cress | vacuole | 54.79 | 59.91 |
| TraesCS2A01G549800.1 | Wheat | extracellular, vacuole | 30.56 | 49.24 |
| Solyc04g007160.1.1 | Tomato | extracellular | 13.8 | 48.7 |
| TraesCS7A01G464200.2 | Wheat | endoplasmic reticulum | 45.42 | 48.65 |
| TraesCS2A01G548900.1 | Wheat | unclear | 42.36 | 46.42 |
| TraesCS2A01G549500.1 | Wheat | golgi | 41.52 | 45.65 |
| TraesCS2A01G548600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 41.52 | 45.65 |
| TraesCS2A01G548500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 41.41 | 45.54 |
| TraesCS2A01G548700.1 | Wheat | mitochondrion | 36.88 | 44.7 |
| TraesCS2A01G549600.1 | Wheat | extracellular, vacuole | 35.62 | 43.61 |
| TraesCS2A01G549700.1 | Wheat | cytosol, extracellular, vacuole | 10.43 | 39.29 |
| TraesCS4A01G066900.2 | Wheat | golgi | 24.87 | 25.71 |
| TraesCS7A01G134500.1 | Wheat | extracellular | 22.02 | 21.28 |
| TraesCS1A01G238900.1 | Wheat | plastid | 23.29 | 21.03 |
| TraesCS3A01G184900.1 | Wheat | cytosol | 12.01 | 16.64 |
Protein Annotations
| Gene3D:2.60.40.1180 | Gene3D:2.60.40.1760 | MapMan:21.2.1.2.5 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0030246 | InterPro:Gal_mutarotase_N | InterPro:Gal_mutarotase_sf_dom | InterPro:Glyco_hydro_31 | InterPro:Glyco_hydro_31_AS | InterPro:Glyco_hydro_31_N_dom |
| InterPro:Glyco_hydro_b | InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | PFAM:PF01055 | PFAM:PF13802 | PFAM:PF16863 |
| ScanProsite:PS00129 | PANTHER:PTHR22762 | PANTHER:PTHR22762:SF125 | SUPFAM:SSF51011 | SUPFAM:SSF51445 | SUPFAM:SSF74650 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS3A01G042100 | EnsemblPlants:TraesCS3A01G042100.1 | TIGR:cd06602 | TIGR:cd14752 | SEG:seg |
Description
No Description!
Coordinates
chr3A:-:22615041..22618763
Molecular Weight (calculated)
104262.0 Da
IEP (calculated)
7.229
GRAVY (calculated)
-0.143
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPRPPSHLL PWRCLLLLLI LALAGSSNGV SATAKAKAKA PAAAPKPAGF GYKLVSLVQR PNGGGLVGFL QVKRRTSTYG PDIPRLRLFV KHETMDRVRV
101: QITDAEKQRW EVPYDLLPRE PSPPLGATAD GAPFTAGEYP GQDLVFTYGR DPFWFAVHRK STRQPLFNTS RAPLVFKDQY LEVSTRLPGD AALYGLGENT
201: QPGGIKLRPN DPYTLYTTDA SAINLNTDLY GSHPVYVDLR NLAGRGVAHA VLLLNSNGMD VLYTGTSLTY KVIGGLLDFY FFAGPTPLAV VDQYTAMIGR
301: PAPMPYWAFG FHQCRWGYHN LSVVEDVVEN YRSAQIPLDV IWNDDDHMDA RKDFTLSPVN YPRPKLLAFL DKIHARGMKY IVLIDPGINV NHTYGVYQRG
401: MDRDIFIKLD GQPYLAQVWP GPVYFPDFIN PNGASWWIDE VRRFHELVPV DGLWIDMNEA SNFCTGKCTI PTTHRCPDPT SKEPWLCCLD CKNLTNTRWD
501: EPPYKINASG KSARLGYNTI ATSAVHYNGV LEYNAHSLYG FSQAIATHKG LQSIQGKRPF ILTRSTFVGS GAYAAHWTGD NKGTWEDLRY SISTMLNFGI
601: FGMPMVGSDI CGFYPASPPP LEELCSRWIE LGAFYPFSRD HANFASPRQE LYQWQSVARS ARNALGMRYR MLPYLYTLNY QAHLTGAPVA RPLFFSFPDF
701: APCYGVSNQF LLGAGVMVSP VLEQGASSVD AVFPPGTWYN LFDTSKAVVS TGSGAAVRLP APLNEVNVHV HQGTVLPLQR GGTISRDARA TPFTLVVAFP
801: LGAADADAEG AVYVDDDERP AMVLAEGQAT YARFHAAVRG GKEVTVRSDV AMGSYSMHKG LVIEKITVLG LHGAGTDLAI QVDGADDATA VATSSPYFAA
901: ADAAQVLRQG EEDDAVEGEK RSGVTMEVGG LALPLGKSFT MTWNMRIQA
101: QITDAEKQRW EVPYDLLPRE PSPPLGATAD GAPFTAGEYP GQDLVFTYGR DPFWFAVHRK STRQPLFNTS RAPLVFKDQY LEVSTRLPGD AALYGLGENT
201: QPGGIKLRPN DPYTLYTTDA SAINLNTDLY GSHPVYVDLR NLAGRGVAHA VLLLNSNGMD VLYTGTSLTY KVIGGLLDFY FFAGPTPLAV VDQYTAMIGR
301: PAPMPYWAFG FHQCRWGYHN LSVVEDVVEN YRSAQIPLDV IWNDDDHMDA RKDFTLSPVN YPRPKLLAFL DKIHARGMKY IVLIDPGINV NHTYGVYQRG
401: MDRDIFIKLD GQPYLAQVWP GPVYFPDFIN PNGASWWIDE VRRFHELVPV DGLWIDMNEA SNFCTGKCTI PTTHRCPDPT SKEPWLCCLD CKNLTNTRWD
501: EPPYKINASG KSARLGYNTI ATSAVHYNGV LEYNAHSLYG FSQAIATHKG LQSIQGKRPF ILTRSTFVGS GAYAAHWTGD NKGTWEDLRY SISTMLNFGI
601: FGMPMVGSDI CGFYPASPPP LEELCSRWIE LGAFYPFSRD HANFASPRQE LYQWQSVARS ARNALGMRYR MLPYLYTLNY QAHLTGAPVA RPLFFSFPDF
701: APCYGVSNQF LLGAGVMVSP VLEQGASSVD AVFPPGTWYN LFDTSKAVVS TGSGAAVRLP APLNEVNVHV HQGTVLPLQR GGTISRDARA TPFTLVVAFP
801: LGAADADAEG AVYVDDDERP AMVLAEGQAT YARFHAAVRG GKEVTVRSDV AMGSYSMHKG LVIEKITVLG LHGAGTDLAI QVDGADDATA VATSSPYFAA
901: ADAAQVLRQG EEDDAVEGEK RSGVTMEVGG LALPLGKSFT MTWNMRIQA
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
Arabidopsis Description
XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.