Factsheet for VIT_01s0011g03450.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75375	Soybean	endoplasmic reticulum	77.6	77.26
KRH45278	Soybean	endoplasmic reticulum	77.16	77.0
Solyc04g007150.2.1	Tomato	extracellular	49.78	76.79
KRH35960	Soybean	endoplasmic reticulum	75.54	75.46
PGSC0003DMT400037696	Potato	extracellular	74.89	74.57
Solyc05g009470.2.1	Tomato	extracellular	74.46	74.14
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	74.35	73.87
Bra004031.1-P	Field mustard	extracellular, vacuole	73.59	73.59
CDY07378	Canola	extracellular, vacuole	69.16	72.7
AT1G68560.1	Thale cress	extracellular, vacuole	71.97	72.68
Bra004319.1-P	Field mustard	extracellular, vacuole	72.73	72.57
CDY04236	Canola	extracellular, vacuole	68.07	72.55
CDY38593	Canola	extracellular, vacuole	67.97	72.35
Bra035407.1-P	Field mustard	extracellular, vacuole	72.51	72.28
CDX96008	Canola	extracellular, vacuole	67.64	71.92
CDY44885	Canola	extracellular, vacuole	68.61	71.88
CDX81531	Canola	extracellular, vacuole	68.18	71.43
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	60.39	70.54
AT3G45940.1	Thale cress	vacuole	63.74	67.86
Zm00001d039994_P001	Maize	extracellular	67.75	67.53
EES02554	Sorghum	extracellular, vacuole	67.32	67.03
Os01t0130400-01	Rice	extracellular	66.99	66.42
TraesCS3D01G038300.1	Wheat	golgi	67.75	66.03
TraesCS3B01G041700.1	Wheat	unclear	66.99	65.5
TraesCS3A01G042100.1	Wheat	nucleus	67.21	65.44
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	66.67	64.57
Solyc04g007160.1.1	Tomato	extracellular	17.64	60.59
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	6.93	60.38
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	36.9	48.71
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	47.08	48.01
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	9.85	37.14
VIT_02s0087g00050.t01	Wine grape	cytosol	10.06	34.83
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	24.03	25.0
VIT_02s0087g00060.t01	Wine grape	extracellular	6.06	21.62
VIT_02s0033g01410.t01	Wine grape	plastid	23.81	20.81
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	24.78	19.2
VIT_08s0007g05100.t01	Wine grape	plastid	14.18	15.04
VIT_02s0087g00030.t01	Wine grape	cytosol	6.82	12.7

Protein Annotations

EntrezGene:100262991	wikigene:100262991	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80
EMBL:AM467592	ProteinID:CAN70430	ProteinID:CAN70430.1	ProteinID:CCB50917	ProteinID:CCB50917.1	ncoils:Coil
UniProt:F6HEX2	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	EntrezGene:LOC100262991	wikigene:LOC100262991	PFAM:PF01055	PFAM:PF13802
PFAM:PF16863	ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF74650	SignalP:SignalP-noTM	TIGR:TC65883	TIGR:TC65979	TMHMM:TMhelix	UniParc:UPI00015C7E34
ArrayExpress:VIT_01s0011g03450	EnsemblPlantsGene:VIT_01s0011g03450	EnsemblPlants:VIT_01s0011g03450.t01	unigene:Vvi.8886	RefSeq:XP_002282429	RefSeq:XP_002282429.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3127812..3132261

Molecular Weight (calculated)

103154.0 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.244

Length

924 amino acids

Sequence
(BLAST)

001: MASSYLLLVV SILCIYGGCG ALAAIPAKIG KGYRLISIEE TANGGLLGHL QVKQKNNIYG ADIPHLQLHV KHETQDRLRV HITDAEKQRW EVPYDLLPRE
101: KPLPLRQAIG RSRKTLSTPT DYPGSELIFS YTTDPFGFAV RRKSTGETLF NTTSDDSDRY GNMVFKDQYL EISTKLPKDA SLYGLGENTQ PHGIKLYPND
201: PYTLYTTDIS AINLNADLYG SHPVYMDLRN TGGKAYAHSV LLLNSNGMDV FYKGSSLTYK VIGGVFDFYF FGGPTPLSVV DQYTSLVGRP APMPYWSLGF
301: HQCRWGYHNL SVVEDVVENY KKAQIPLDVI WNDDDHMDGH KDFTLNPVNY PRPKLLEFLN KIHDRGMKYI VIIDPGIGVN STYGVYQRGM ANDVFIKYDG
401: EPFLAQVWPG PVYFPDFLNP KTVSWWGDEI RRFHELVPVD GLWIDMNEAS NFCTGKCTIP KGKVCPSGTG PGWICCLDCK NITKTRWDDP PYKINASGLE
501: VPIGYKTIAT SAVHYNGVLE YDAHSLYGFS QSIATHKGLQ GLEGKRPFIL SRSTYVGSGK YAAHWTGDNK GTWDDIKYSI STMLNFGIFG VPMVGSDICG
601: FYPAPTEELC NRWIELGAFY PFSRDHANYY SPRQELYQWD SVAKSARNAL GMRYKLLPYL YTLNYEAHIS GAPIARPLFF TFPTFSKCYE VSTQFLLGSG
701: VLVSPVLDKG KTKVNALFPP GTWYSLFDLK ETIVSEGDYR SLDAPLHVIN VHVYQNTILP MQQGGLISKE ARMTPFTLIV TFPAGATEGH AEGKLYLDDD
801: ELPEMTLGNG FSTYVDLHAT VENKMVKVWS DVAEGKYALE KGWTIEKITV LGLSGSGESF ALEVDGSSVS DVSHVQLTAS EQHVATDKLE DEGDTRKSMM
901: IEIQGLDLPV GKNFAMSWKM GVHG

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.