Factsheet for Solyc04g007160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
golgi 2
vacuole 2
extracellular 3
mitochondrion 3
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	extracellular

plastid: 22908117
extracellular: 26583031
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	93.68	27.1
Solyc05g009470.2.1	Tomato	extracellular	70.63	20.47
CDX81531	Canola	extracellular, vacuole	62.08	18.93
KRH35960	Soybean	endoplasmic reticulum	65.06	18.92
CDY44885	Canola	extracellular, vacuole	61.71	18.82
CDY07378	Canola	extracellular, vacuole	61.34	18.77
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	53.53	18.2
CDY38593	Canola	extracellular, vacuole	58.74	18.2
CDX96008	Canola	extracellular, vacuole	58.74	18.18
Bra004319.1-P	Field mustard	extracellular, vacuole	62.08	18.03
KRH75375	Soybean	endoplasmic reticulum	61.71	17.89
CDY04236	Canola	extracellular, vacuole	57.62	17.88
Bra004031.1-P	Field mustard	extracellular, vacuole	61.34	17.86
Bra035407.1-P	Field mustard	extracellular, vacuole	61.34	17.8
VIT_01s0011g03450.t01	Wine grape	extracellular	60.59	17.64
KRH45278	Soybean	endoplasmic reticulum	60.59	17.6
AT1G68560.1	Thale cress	extracellular, vacuole	59.85	17.6
AT3G45940.1	Thale cress	vacuole	53.53	16.59
Solyc04g009630.2.1	Tomato	extracellular	37.92	15.72
EES02554	Sorghum	extracellular, vacuole	53.16	15.41
Os01t0130400-01	Rice	extracellular	52.79	15.24
Zm00001d039994_P001	Maize	extracellular	52.04	15.1
TraesCS3B01G041700.1	Wheat	unclear	49.81	14.18
TraesCS3D01G038300.1	Wheat	golgi	48.7	13.82
TraesCS3A01G042100.1	Wheat	nucleus	48.7	13.8
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	48.7	13.73
Solyc02g069670.2.1	Tomato	extracellular	27.14	8.68
Solyc04g049070.2.1	Tomato	plastid	22.3	6.51
Solyc08g075530.2.1	Tomato	plastid	19.7	4.96
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	1.86	4.72
Solyc03g094020.2.1	Tomato	extracellular	13.01	4.12
Solyc04g007150.2.1	Tomato	extracellular	2.97	1.34

Protein Annotations

EnsemblPlants:Solyc04g007160.1.1	EnsemblPlantsGene:Solyc04g007160.1	Gene3D:2.60.40.1180	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_31
InterPro:Glyco_hydro_b	InterPro:IPR013780	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	PFAM:PF01055	SUPFAM:SSF51011
UniParc:UPI00027667CD	UniProt:K4BNM3	MapMan:50.3.2	:	:	:

Description

No Description!

Coordinates

chr4:+:870645..871454

Molecular Weight (calculated)

30297.4 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.182

Length

269 amino acids

Sequence
(BLAST)

001: MRYKLLPYFY TLNYEAHTTG APIARPLFFS FPTLTELHDV STQFLVGTSV MVSPVLDQGK TEVKVLFPPG TWYNLFDMTQ AIVTKDLHYL TLDAPLSVVN
101: VHVYENTIIP MQRGGMISKE ARTTPFTLVV TLPSGTNDIE AKGNLFLDDD ELPEMKLGNG QSTYIDFHAT ASNGTMKLWS EVQESKFALD KGWFIEKVIV
201: LGTNGTDGAF EINVDGQPIE DGSRVKYSTT EHKYIDSMDD EVDKRKSMMM EIHGLQLPLG KNFVMSWKM

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.