Factsheet for Bra004319.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68560.1	Bra005852.1-P	AT5G05410.1	18552202
AT1G68560.1	Bra009112.1-P	AT5G05410.1	18552202
AT1G68560.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96008	Canola	extracellular, vacuole	93.09	99.19
CDY38593	Canola	extracellular, vacuole	92.12	98.27
Bra035407.1-P	Field mustard	extracellular, vacuole	94.71	94.61
Bra004031.1-P	Field mustard	extracellular, vacuole	89.85	90.04
AT1G68560.1	Thale cress	extracellular, vacuole	88.23	89.29
AT3G45940.1	Thale cress	vacuole	76.35	81.45
KRH75375	Soybean	endoplasmic reticulum	75.49	75.32
KRH45278	Soybean	endoplasmic reticulum	74.51	74.51
KRH35960	Soybean	endoplasmic reticulum	73.76	73.84
Solyc04g007150.2.1	Tomato	extracellular	47.08	72.79
VIT_01s0011g03450.t01	Wine grape	extracellular	72.57	72.73
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	72.57	72.26
PGSC0003DMT400037696	Potato	extracellular	72.03	71.88
Solyc05g009470.2.1	Tomato	extracellular	71.92	71.77
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	58.32	68.27
EES02554	Sorghum	extracellular, vacuole	64.9	64.76
Zm00001d039994_P001	Maize	extracellular	64.47	64.4
Os01t0130400-01	Rice	extracellular	64.15	63.73
TraesCS3D01G038300.1	Wheat	golgi	63.71	62.24
Solyc04g007160.1.1	Tomato	extracellular	18.03	62.08
TraesCS3A01G042100.1	Wheat	nucleus	62.96	61.43
TraesCS3B01G041700.1	Wheat	unclear	62.63	61.38
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	63.07	61.22
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	6.37	55.66
Bra006111.1-P	Field mustard	extracellular, vacuole	43.74	45.45
Bra037754.1-P	Field mustard	vacuole	22.79	25.09
Bra024240.1-P	Field mustard	vacuole	24.73	24.86
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	21.71	20.32
Bra028330.1-P	Field mustard	cytosol	16.95	17.48

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80	EnsemblPlantsGene:Bra004319	EnsemblPlants:Bra004319.1
EnsemblPlants:Bra004319.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_N
InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	UniProt:M4CJD5	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863	ScanProsite:PS00129
PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002541752	:	:	:	:

Description

AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase

Coordinates

chrA07:-:17955824..17959576

Molecular Weight (calculated)

103331.0 Da

IEP (calculated)

7.299

GRAVY (calculated)

-0.213

Length

926 amino acids

Sequence
(BLAST)

001: MVTSRIVFSS LSLLVALILC FSPIHSSNTI GKGYRLISIE ESPDGGFIGY LQVKQKNKIY GSDITTLRLY VKHETDTRLR VHITDAKKQR WEVPYNLLPR
101: EQPPPVGKVI GKSRKSPITV QELSGSELIF SYTTDPFSFA VKRKSNGQTI FNTSSNSAFG EMVFKDQYLE ISTSLPKDAS IYGLGENSQA NGIKLVPNEP
201: YTLYTEDVSA INLNTDLYGS HPVYMDLRNV GGKPYAHAVL LLNSNGMDVF YRGTSLTYKV IGGVFDFHFV AGPSPLDVVD QYTSLIGRPA PMPYWSLGFH
301: QCRWGYRNLS VIEDVVDSYQ KAKIPLDVIW NDDDHMDAKK DFTLSPISYP RAKLLNFLDR IHKMGMKYVV INDPGIGVNS SYGVYQRGMA NDVFIKYEGK
401: PFLAQVWPGA VHFPDFLNPK TVSWWGEEIR RFHELAPIDG LWIDMNEVSN FCSGLCTIPK GKKCPTGEGP GWICCLDCKN ITKTRWDDPP YKINATGVTA
501: PIGFKTIATS ALHYNGVREY DAHSIYGFSE TVATHKGLLS IEGKRPFILS RSTFVGSGKY AAHWTGDNQG TWQSLQVSIS TMLNFGIFGV PMVGSDICGF
601: YPQPTEELCN RWIEVGAFYP FSRDHANYYS PRQELYQWDT VAESARNALG MRYKILPYLY TLNYEAHMTG APIARPLFFS FPEYTECYGS SRQFLLGSGL
701: MISPVLEQGK TEVEALFPPG SWYHMFDMTQ AVVSKKGKRV TLPAPLNFVN VHLYQNTILP MQQGGLISKE ARTTPFSLVI TFPAGASEGY AKGKLYLDED
801: ELPEMKLGNG QSTYVDFYAS VGNGTVKMWS EVKEGKFALS KGWVIEMVSV LGLRGGGGQA SEIVINGSPV SNEGKKVEVN LKEHTYVVGL EEEGENKSVM
901: VEVRGLEMLV GKDFNMSWKM SLNGAN

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.