Factsheet for TraesCS3B01G041700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68560.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G68560.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G68560.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G038300.1	Wheat	golgi	96.19	95.89
TraesCS3A01G042100.1	Wheat	nucleus	95.87	95.47
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	93.33	92.45
EES02554	Sorghum	extracellular, vacuole	81.8	83.3
Zm00001d039994_P001	Maize	extracellular	81.27	82.85
Os01t0130400-01	Rice	extracellular	78.73	79.83
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	61.38	73.32
VIT_01s0011g03450.t01	Wine grape	extracellular	65.5	66.99
Solyc04g007150.2.1	Tomato	extracellular	41.9	66.11
KRH35960	Soybean	endoplasmic reticulum	63.6	64.97
KRH75375	Soybean	endoplasmic reticulum	63.28	64.44
CDY04236	Canola	extracellular, vacuole	59.05	64.36
KRH45278	Soybean	endoplasmic reticulum	62.96	64.25
CDY07378	Canola	extracellular, vacuole	59.58	64.05
AT1G68560.1	Thale cress	extracellular, vacuole	62.01	64.04
Bra004031.1-P	Field mustard	extracellular, vacuole	62.54	63.96
CDY38593	Canola	extracellular, vacuole	58.41	63.59
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	62.54	63.55
CDX96008	Canola	extracellular, vacuole	57.99	63.06
Bra035407.1-P	Field mustard	extracellular, vacuole	61.8	63.0
CDY44885	Canola	extracellular, vacuole	58.73	62.93
CDX81531	Canola	extracellular, vacuole	58.73	62.93
Bra004319.1-P	Field mustard	extracellular, vacuole	61.38	62.63
PGSC0003DMT400037696	Potato	extracellular	60.74	61.85
Solyc05g009470.2.1	Tomato	extracellular	60.63	61.75
AT3G45940.1	Thale cress	vacuole	55.03	59.91
Solyc04g007160.1.1	Tomato	extracellular	14.18	49.81
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	45.61	46.44
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	43.6	46.29
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	42.33	46.19
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	42.22	46.07
TraesCS4B01G244500.1	Wheat	golgi	25.19	25.98
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	21.9	21.68
TraesCS1B01G251000.1	Wheat	plastid	23.39	21.25
TraesCS3B01G214700.1	Wheat	plastid	15.34	16.0

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863
ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3B01G041700	EnsemblPlants:TraesCS3B01G041700.1	TIGR:cd06602	TIGR:cd14752	SEG:seg

Description

No Description!

Coordinates

chr3B:+:20718020..20722217

Molecular Weight (calculated)

103896.0 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.134

Length

945 amino acids

Sequence
(BLAST)

001: MLPRPPPHLL PWRYLVLLFL ALAVSSNGVS ATAKPKAKAP TPAGFGYKLV SLVQRPNGGG LVGLLQVKRR TSTYGPDIPR LRLFVKHETK DRVRVQITDA
101: EKQRWEVPYD LLPREPSPPL GAATGGAPFT AGEYPGQDLV FTYGRDPFWF AVHRLSTRQP LFNTSRAPLV FKDQYLEVST RLPGDAALYG LGESTQPGGI
201: KLRPNDPYTL YTTDASAINL NTDLYGSHPV YVDLRNLAGR GVAHAVLLLN SNGMDVFYTG TSLTYKVIGG LLDFYFFAGP TPLAVVDQYT AMIGRPAPMP
301: YWAFGFHQCR WGYHNLSVVE DVVENYWSAQ IPLDVIWTDD DHMDARKDFT LSPVNYPRPK LLAFLDKIHA RGMKYIVLID PGINVNDTYG VYQRGMDRDI
401: FIKLDGQPYL AQVWPGPVYF PDFINPDGAS WWIDEVRRFH ELVPVDGLWI DMNEASNFCT GKCTIPTTHR CPDPTSKEPW LCCLDCKNLT NTRWDEPPYK
501: INASGKSARL GYNTIATSAV HYNGVLEYNA HSLYGFSQAI ATHKGLQSIQ GKRPFILTRS TFVGSGAYAA HWTGDNKGTW EDLRYSISTM LNFGIFGMPM
601: VGSDICGFYP ASPPPLEELC SRWIELGAFY PFSRDHANFA SPRQELYQWQ SVATSARNAL GMRYRLLPYL YTLNYQAHLT GAPVARPLFF SFPDFAPCYG
701: VSNQFLLGAG VMVSPVLQQG ASSVDAVFPP GTWYNLFDTT KAVVSTGSGA SAVFRLPAPL NEVNVHVHQG TVLPLQRGGT ISRDARATPF TLVVAFPLGA
801: EDADAEGAVY VDDDERPAMV LAEGQATYAR FHAAVRGGRE VTVRSDVAMG SYSMSKGLVI EKITVLGLHG AGKDLAIQVD GADDATAVAT SSPYFAAADA
901: AQALRQGEEE DGVEGGRRGV TMEVGGLALP LGKSFTMTWS MHIEA

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.