Factsheet for TraesCS5B01G275300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G276000.1	Wheat	mitochondrion	98.56	98.56
TraesCS5D01G283300.1	Wheat	mitochondrion	98.56	98.56
HORVU5Hr1G074920.10	Barley	mitochondrion	97.84	97.84
HORVU5Hr1G074850.1	Barley	cytosol	49.64	94.52
EER96988	Sorghum	mitochondrion	89.21	89.86
Os09t0498100-01	Rice	mitochondrion	87.05	88.97
Zm00001d020983_P001	Maize	mitochondrion	87.77	88.41
HORVU5Hr1G074860.2	Barley	mitochondrion	34.53	75.0
Bra011546.1-P	Field mustard	mitochondrion	46.04	56.64
CDX69073	Canola	mitochondrion	46.04	56.64
CDX75448	Canola	mitochondrion	46.04	56.64
AT4G34620.1	Thale cress	mitochondrion	45.32	55.75
KRG92023	Soybean	mitochondrion	45.32	51.22
HORVU4Hr1G046370.3	Barley	cytosol, mitochondrion, plastid	32.37	34.35
KRH34762	Soybean	mitochondrion	46.04	27.83

Protein Annotations

MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023803	HAMAP:MF_00385
PFAM:PF00886	PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565
TIGRFAMs:TIGR00002	EnsemblPlantsGene:TraesCS5B01G275300	EnsemblPlants:TraesCS5B01G275300.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:461289859..461292030

Molecular Weight (calculated)

15314.6 Da

IEP (calculated)

10.308

GRAVY (calculated)

-0.517

Length

139 amino acids

Sequence
(BLAST)

001: MVVRIRLARF GCRNRPFYRV MAADSRSPRD GKHLEVLGYY NPLPGKDGGK RMGLKFDRVK YWLSVGAQPS DPVQRILFRA GVLPPPPLLA MGRKGGPRDR
101: NPIHPMTGRP LDLEGVSIVD DPNAAEGDAE APTEPSLEA

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.