CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020983_P001	Maize	mitochondrion	94.93	94.93
Os09t0498100-01	Rice	mitochondrion	93.48	94.85
TraesCS1D01G369100.1	Wheat	mitochondrion	89.13	90.44
TraesCS5D01G283300.1	Wheat	mitochondrion	89.86	89.21
TraesCS5B01G275300.1	Wheat	mitochondrion	89.86	89.21
TraesCS5A01G276000.1	Wheat	mitochondrion	89.86	89.21
TraesCS1A01G363900.1	Wheat	mitochondrion	89.86	89.21
HORVU5Hr1G074920.10	Barley	mitochondrion	89.13	88.49
HORVU5Hr1G074850.1	Barley	cytosol	44.93	84.93
HORVU5Hr1G074860.2	Barley	mitochondrion	35.51	76.56
KXG25589	Sorghum	cytosol	37.68	64.2
Bra011546.1-P	Field mustard	mitochondrion	47.1	57.52
CDX75448	Canola	mitochondrion	47.1	57.52
CDX69073	Canola	mitochondrion	47.1	57.52
AT4G34620.1	Thale cress	mitochondrion	47.1	57.52
KRG92023	Soybean	mitochondrion	46.38	52.03
HORVU4Hr1G046370.3	Barley	cytosol, mitochondrion, plastid	31.88	33.59
KRH34762	Soybean	mitochondrion	47.1	28.26

Protein Annotations

MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	EntrezGene:8054757	UniProt:C5X4K2	EnsemblPlants:EER96988	ProteinID:EER96988
ProteinID:EER96988.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0032543
InterPro:IPR023803	HAMAP:MF_00385	PFAM:PF00886	PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16
InterPro:Ribosomal_S16_dom_sf	EnsemblPlantsGene:SORBI_3002G253100	SUPFAM:SSF54565	TIGRFAMs:TIGR00002	UniParc:UPI0001A83810	RefSeq:XP_002460467.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:63949960..63953048

Molecular Weight (calculated)

15296.5 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.544

Length

138 amino acids

Sequence
(BLAST)

001: MVVRIRLARF GCRNRPFYRV MAADSRSPRD GKHLEVLGYY NPLPGKDGGK RMGLKFDRVK YWLSVGAQPS DPVQSILFRA GLLPPPPMLA MARKGGPRDR
101: RPIHPMTGRP LDLEGVTIVD DSNAPEGDAE EPTDEVAS

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.