Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011546.1-P | Field mustard | mitochondrion | 91.15 | 91.15 |
| CDX75448 | Canola | mitochondrion | 91.15 | 91.15 |
| CDX69073 | Canola | mitochondrion | 90.27 | 90.27 |
| KRG92023 | Soybean | mitochondrion | 55.75 | 51.22 |
| HORVU5Hr1G074860.2 | Barley | mitochondrion | 27.43 | 48.44 |
| EER96988 | Sorghum | mitochondrion | 57.52 | 47.1 |
| Os09t0498100-01 | Rice | mitochondrion | 56.64 | 47.06 |
| AT5G56940.1 | Thale cress | mitochondrion | 55.75 | 46.67 |
| Zm00001d020983_P001 | Maize | mitochondrion | 56.64 | 46.38 |
| TraesCS1D01G369100.1 | Wheat | mitochondrion | 55.75 | 46.32 |
| Os08t0517900-01 | Rice | mitochondrion | 55.75 | 45.99 |
| HORVU5Hr1G074920.10 | Barley | mitochondrion | 55.75 | 45.32 |
| TraesCS1A01G363900.1 | Wheat | mitochondrion | 55.75 | 45.32 |
| TraesCS5A01G276000.1 | Wheat | mitochondrion | 55.75 | 45.32 |
| TraesCS5B01G275300.1 | Wheat | mitochondrion | 55.75 | 45.32 |
| TraesCS5D01G283300.1 | Wheat | mitochondrion | 55.75 | 45.32 |
| HORVU5Hr1G074850.1 | Barley | cytosol | 22.12 | 34.25 |
| KXG25589 | Sorghum | cytosol | 21.24 | 29.63 |
| KRH34762 | Soybean | mitochondrion | 57.52 | 28.26 |
| HORVU4Hr1G046370.3 | Barley | cytosol, mitochondrion, plastid | 25.66 | 22.14 |
Protein Annotations
| MapMan:17.7.1.2.14 | Gene3D:3.30.1320.10 | EntrezGene:829614 | UniProt:A0A178UZA3 | ProteinID:AEE86401.1 | EMBL:AF412081 |
| ArrayExpress:AT4G34620 | EnsemblPlantsGene:AT4G34620 | RefSeq:AT4G34620 | TAIR:AT4G34620 | RefSeq:AT4G34620-TAIR-G | EnsemblPlants:AT4G34620.1 |
| TAIR:AT4G34620.1 | EMBL:AY045607 | EMBL:AY048218 | EMBL:AY052220 | EMBL:AY086956 | EMBL:AY143795 |
| ProteinID:CAA18841.1 | ProteinID:CAB80179.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | GO:GO:0019904 | GO:GO:0030529 |
| GO:GO:0032543 | InterPro:IPR023803 | HAMAP:MF_00385 | RefSeq:NP_195188.1 | UniProt:O65686 | ProteinID:OAO98192.1 |
| PFAM:PF00886 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR12919 | PANTHER:PTHR12919:SF24 | InterPro:Ribosomal_S16 | InterPro:Ribosomal_S16_dom_sf | SUPFAM:SSF54565 |
| Symbol:SSR16 | TIGRFAMs:TIGR00002 | UniParc:UPI00000AC6A4 | : | : | : |
Description
RPS16-1SSR16 [Source:UniProtKB/TrEMBL;Acc:A0A178UZA3]
Coordinates
chr4:-:16534855..16536224
Molecular Weight (calculated)
12699.5 Da
IEP (calculated)
10.417
GRAVY (calculated)
-0.371
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVKIRLARL GCKHRPFYRV VVADEKSRRD GKQIEVLGFY DPLQGKEDAD RVSLKFDRIK YWLSVGAQPT DTVESMLFRA GLIPPKPMVV VGSKNGQKST
101: SQHVSPITGE ILN
101: SQHVSPITGE ILN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.