Factsheet for Os08t0517900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 18453549
plastid: 18453549

gfp PMID: 18453549 doi

M Ueda, T Nishikawa, M Fujimoto, H Takanashi, S Arimura, N Tsutsumi, K Kadowaki

Genetic Diversity Department, National Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0498100-01	Rice	mitochondrion	86.86	87.5
KXG25589	Sorghum	cytosol	42.34	71.6
Bra011546.1-P	Field mustard	mitochondrion	46.72	56.64
CDX69073	Canola	mitochondrion	46.72	56.64
CDX75448	Canola	mitochondrion	46.72	56.64
AT4G34620.1	Thale cress	mitochondrion	45.99	55.75
KRG92023	Soybean	mitochondrion	44.53	49.59
KRH34762	Soybean	mitochondrion	43.8	26.09

Protein Annotations

MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	EntrezGene:4346044	EMBL:AK064304	ProteinID:BAC57322.1	ProteinID:BAF24161.1
ProteinID:BAT06259.1	ProteinID:EAZ43344.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0032543	InterPro:IPR023803	HAMAP:MF_00385	EnsemblPlantsGene:Os08g0517900	EnsemblPlants:Os08t0517900-01	PFAM:PF00886
PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	UniProt:Q84Z89	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565
TIGRFAMs:TIGR00002	UniParc:UPI0000004622	RefSeq:XP_015648554.1	:	:	:

Description

Similar to 30S ribosomal protein S16. (Os08t0517900-01)

Coordinates

chr8:-:25702642..25704345

Molecular Weight (calculated)

15222.5 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.625

Length

137 amino acids

Sequence
(BLAST)

001: MVVRIRLARF GCRNRPFYRL MAADSRSPRD GKHLEVLGYY DPLPGKDGGK RMGLKFDRVK YWLSVGAQPS DPVERILYRA GILPPPPMLA MAHKGGPRDR
101: RPIDPMTGRP LDLEGVTVVD DSHTPKSGDG APNEETA

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.