Factsheet for Zm00001d020983_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96988	Sorghum	mitochondrion	94.93	94.93
Os09t0498100-01	Rice	mitochondrion	89.13	90.44
TraesCS5B01G275300.1	Wheat	mitochondrion	88.41	87.77
TraesCS1D01G369100.1	Wheat	mitochondrion	86.23	87.5
TraesCS5D01G283300.1	Wheat	mitochondrion	87.68	87.05
TraesCS5A01G276000.1	Wheat	mitochondrion	87.68	87.05
HORVU5Hr1G074920.10	Barley	mitochondrion	86.96	86.33
TraesCS1A01G363900.1	Wheat	mitochondrion	86.96	86.33
HORVU5Hr1G074850.1	Barley	cytosol	42.75	80.82
HORVU5Hr1G074860.2	Barley	mitochondrion	35.51	76.56
AT4G34620.1	Thale cress	mitochondrion	46.38	56.64
CDX75448	Canola	mitochondrion	46.38	56.64
CDX69073	Canola	mitochondrion	46.38	56.64
Bra011546.1-P	Field mustard	mitochondrion	46.38	56.64
KRG92023	Soybean	mitochondrion	45.65	51.22
HORVU4Hr1G046370.3	Barley	cytosol, mitochondrion, plastid	31.88	33.59
KRH34762	Soybean	mitochondrion	45.65	27.39

Protein Annotations

EntrezGene:100273480	MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	UniProt:B4FVT8	EMBL:BT041226	EMBL:EU960724
EMBL:EU976770	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023803	HAMAP:MF_00385	ProteinID:ONM56033.1
PFAM:PF00886	PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565
TIGRFAMs:TIGR00002	UniParc:UPI00017B7EC4	EnsemblPlantsGene:Zm00001d020983	EnsemblPlants:Zm00001d020983_P001	EnsemblPlants:Zm00001d020983_T001	SEG:seg

Description

small subunit ribosomal protein 16

Coordinates

chr7:+:139018844..139024560

Molecular Weight (calculated)

15302.6 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.492

Length

138 amino acids

Sequence
(BLAST)

001: MVVRIRLARF GCRNRPFYRV MAADSRSPRD GKHLEVLGYY NPLPGKDGGK RMGLKFDRVK YWLSVGAQPS DPVQSILFRA GLLPPPPLLA MARKGGPRDR
101: RPIHPMTGRP LDLEGVAIID NSNAPEGDTE VPTDEVAQ

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.