Factsheet for HORVU4Hr1G059120.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G059120.2
HORVU5Hr1G045920.2
HORVU6Hr1G065690.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	HORVU6Hr1G065690.1	AT1G63000.1	21798944
AT1G78570.1	HORVU4Hr1G059120.2	AT1G78570.1	21798944
AT1G78570.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G099200.1	Wheat	cytosol	92.53	99.11
TraesCS4D01G206000.1	Wheat	mitochondrion	92.81	98.39
TraesCS4B01G205100.3	Wheat	mitochondrion	92.81	98.39
Os03t0278200-01	Rice	nucleus, plasma membrane	87.55	93.78
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	86.86	93.45
EER95086	Sorghum	cytosol, mitochondrion, plastid	86.17	92.71
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	85.62	92.11
Zm00001d028654_P002	Maize	cytosol	85.06	91.52
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	78.42	84.75
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	78.01	84.18
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	77.32	84.06
CDX97601	Canola	cytosol, mitochondrion, plastid	74.97	83.9
CDX98494	Canola	cytosol, mitochondrion, plastid	74.83	83.75
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	73.44	83.49
CDY32340	Canola	cytosol, mitochondrion, peroxisome	74.14	83.36
AT3G14790.2	Thale cress	mitochondrion	76.76	83.21
CDY40003	Canola	cytosol, mitochondrion, plastid	77.04	83.13
CDY20084	Canola	cytosol, mitochondrion, peroxisome	73.86	82.92
CDY35137	Canola	cytosol, mitochondrion, plastid	76.63	82.69
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	73.58	82.61
CDY24092	Canola	cytosol, mitochondrion, peroxisome	75.93	82.56
CDY45116	Canola	cytosol, mitochondrion, peroxisome	75.93	82.56
CDY60210	Canola	cytosol, mitochondrion, peroxisome	76.21	82.48
CDY25850	Canola	cytosol, mitochondrion, peroxisome	48.82	82.48
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	76.07	82.34
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	76.49	82.29
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	75.66	82.26
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	75.8	82.16
CDX88455	Canola	cytosol, peroxisome, plastid	78.7	80.48
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	71.23	78.39
HORVU5Hr1G007050.2	Barley	plastid	77.32	77.1
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	69.02	76.3
Solyc08g069110.2.1	Tomato	unclear	68.6	76.19
KRH16155	Soybean	cytosol	68.05	75.11
KRH04933	Soybean	cytosol, mitochondrion, plastid	66.81	75.0
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	32.92	74.61
HORVU5Hr1G060660.3	Barley	mitochondrion	12.59	23.16
HORVU5Hr1G055920.8	Barley	plastid	11.89	22.99
HORVU5Hr1G077110.3	Barley	mitochondrion	12.45	21.38
HORVU7Hr1G074300.2	Barley	golgi	11.62	20.74
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	11.76	20.63
HORVU5Hr1G080860.10	Barley	mitochondrion	11.89	20.28
HORVU7Hr1G031270.1	Barley	endoplasmic reticulum	12.31	20.09
HORVU7Hr1G053260.2	Barley	plastid	12.72	18.78
HORVU1Hr1G095430.8	Barley	cytosol, nucleus	9.54	18.3
HORVU5Hr1G075660.1	Barley	plastid	12.72	18.11
HORVU4Hr1G063010.1	Barley	peroxisome	12.45	17.51

Protein Annotations

EMBL:AK355616	EMBL:AK362415	EnsemblPlants:HORVU4Hr1G059120.2	EnsemblPlantsGene:HORVU4Hr1G059120	Gene3D:3.40.50.720	Gene3D:3.90.25.10
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321
PFAM:PF16363	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000B4649A4	UniProt:A0A287P9C9	MapMan:3.13.6.1

Description

No Description!

Coordinates

chrchr4H:+:494209102..494213007

Molecular Weight (calculated)

80802.5 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.305

Length

723 amino acids

Sequence
(BLAST)

001: AVECSLLPPP PLQDSSSTPP DLQGAAARQI SSARPRCALA ACAICLAKMA TYEPKNILIT GAAGFIASHV ANRLIRSYPH YKIVVLDKID YCSNLKNLNP
101: SRPSPNFKFV KGDIASADLV NYLLITESID TIMHFAAQTH VDNSFGNSFE FTKNNIYGTH VLLEACKVTG QIRRFIHVST DEVYGETDED AVVGNHEASQ
201: LLPTNPYSAT KAGAEMLVMA YGRSYGLPVI TTRGNNVYGP NQFPEKLIPK FILLAMKGLP LPIHGDGSNV RSYLYCEDVA EAFEVVLHKG EVGHVYNIGT
301: VKERRVIDVA SDICKLFGLD TEKVIRFVEN RPFNDQRYFL DDQKLKKLGW AERTTWEEGL KKTIEWYTSN PEYWGDVAGA LLPHPRMLMT PGVERHNWTE
401: EIKSLASSPA EAKECNTVAA AATSNSTSSA PQKATYKFLI YGKTGWIGGL LGKICEKQSI PYEYGKGRLQ ERSQLLQDIR NVKPTHVFNA AGVTGRPNVD
501: WCETHKQDTI RTNVVGTLNL ADVCREQGLL MINYATGCIF EYNAEHPEGS GIGFKEEDTP NFVGSFYSKT KAMVEELLKD YDNVCTLRVR MPISSDLSNP
601: RNFITKIARY DKVVNIPNSM TILDELLPIS VEMAKRDCRG IWNFTNPGVV SHNEILEMYK EYINPDFKWT NFTLEEQAKV IVAPRSNNEM DASKLKSEFP
701: ELLSIKESLI KNVFEPNRKV STN

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [cytosol,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.