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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 1
  • golgi 1
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:cytosol, golgi, mitochondrion, peroxisome, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400043358
PGSC0003DMT400058533
PGSC0003DMT400075973

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78570.1 PGSC0003DMT400058533 AT1G63000.1 21798944
AT1G78570.1 PGSC0003DMT400075973 AT1G78570.1 21798944
AT1G78570.1 PGSC0003DMT400043358 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g069110.2.1 Tomato unclear 96.94 97.39
VIT_04s0069g00830.t01 Wine grape cytosol, mitochondrion, plastid 82.42 82.04
KRH16155 Soybean cytosol 77.83 77.71
AT1G78570.1 Thale cress cytosol, mitochondrion, peroxisome 79.36 77.58
KRH04933 Soybean cytosol, mitochondrion, plastid 76.3 77.48
CDX98494 Canola cytosol, mitochondrion, plastid 75.69 76.63
CDX97601 Canola cytosol, mitochondrion, plastid 75.69 76.63
Bra027310.1-P Field mustard cytosol, mitochondrion, peroxisome 77.83 76.54
CDY40003 Canola cytosol, mitochondrion, plastid 78.29 76.42
CDY35137 Canola cytosol, mitochondrion, plastid 78.29 76.42
PGSC0003DMT400058533 Potato cytosol 35.02 76.08
Bra026009.1-P Field mustard cytosol, mitochondrion, plastid 77.98 75.89
Bra035048.1-P Field mustard cytosol, mitochondrion, plastid 77.68 75.82
CDY32340 Canola cytosol, mitochondrion, peroxisome 74.46 75.74
CDY20084 Canola cytosol, mitochondrion, peroxisome 74.46 75.62
AT1G53500.1 Thale cress cytosol, extracellular, peroxisome 77.06 75.56
CDY24092 Canola cytosol, mitochondrion, peroxisome 76.76 75.49
AT3G14790.2 Thale cress mitochondrion 76.91 75.41
CDY45116 Canola cytosol, mitochondrion, peroxisome 76.61 75.34
Bra021578.1-P Field mustard cytosol, mitochondrion, plastid 74.01 75.16
Bra038127.1-P Field mustard cytosol, mitochondrion, peroxisome 76.76 75.15
CDY60210 Canola cytosol, mitochondrion, peroxisome 76.76 75.15
Bra039675.1-P Field mustard cytosol, mitochondrion, peroxisome 76.3 75.04
EER95078 Sorghum cytosol, mitochondrion, peroxisome 76.91 74.85
EER95086 Sorghum cytosol, mitochondrion, plastid 76.76 74.7
Zm00001d028654_P002 Maize cytosol 76.61 74.55
Zm00001d047796_P003 Maize extracellular, nucleus, plasma membrane 76.45 74.4
Os03t0278200-01 Rice nucleus, plasma membrane 76.76 74.37
TraesCS4A01G099200.1 Wheat cytosol 76.76 74.37
PGSC0003DMT400054754 Potato cytosol, mitochondrion, plastid 76.61 74.33
TraesCS4D01G206000.1 Wheat mitochondrion 76.76 73.61
PGSC0003DMT400018192 Potato cytosol, mitochondrion, plastid 75.84 73.59
TraesCS4B01G205100.3 Wheat mitochondrion 76.61 73.46
CDX88455 Canola cytosol, peroxisome, plastid 77.98 72.14
CDY25850 Canola cytosol, mitochondrion, peroxisome 46.02 70.33
HORVU4Hr1G059120.2 Barley plastid 76.3 69.02
GSMUA_Achr3P31820_001 Banana cytosol, mitochondrion, plastid 63.61 68.76
PGSC0003DMT400012829 Potato cytosol, extracellular, golgi 13.91 26.15
PGSC0003DMT400059215 Potato plastid 8.72 25.56
PGSC0003DMT400031994 Potato golgi 13.15 24.5
PGSC0003DMT400007898 Potato cytosol 12.84 23.93
PGSC0003DMT400041159 Potato golgi, mitochondrion 13.46 22.68
PGSC0003DMT400080637 Potato golgi 13.46 22.0
PGSC0003DMT400018060 Potato cytosol, endoplasmic reticulum, golgi, plastid 14.22 21.38
PGSC0003DMT400024810 Potato cytosol, endoplasmic reticulum, golgi, plastid 13.91 20.92
PGSC0003DMT400010106 Potato cytosol, endoplasmic reticulum, golgi, plastid 14.22 20.85
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 14.22 20.76
PGSC0003DMT400054459 Potato mitochondrion 13.15 20.62
PGSC0003DMT400066897 Potato endoplasmic reticulum, golgi, mitochondrion, plastid 13.46 20.42
PGSC0003DMT400029181 Potato cytosol, golgi, peroxisome 13.15 20.24
PGSC0003DMT400020223 Potato endoplasmic reticulum 13.3 20.19
PGSC0003DMT400040718 Potato cytosol, endoplasmic reticulum, golgi 13.3 20.05
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 13.76 19.82
PGSC0003DMT400059216 Potato cytosol 4.28 18.67
Protein Annotations
EnsemblPlants:PGSC0003DMT400075973EnsemblPlantsGene:PGSC0003DMG400029550EntrezGene:102578239Gene3D:3.40.50.720Gene3D:3.90.25.10InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sfInterPro:RmlD-like-bdPANTHER:PTHR43000PANTHER:PTHR43000:SF8PFAM:PF04321PFAM:PF16363
PGSC:PGSC0003DMG400029550RefSeq:XP_006355193.1SUPFAM:SSF51735UniParc:UPI0002955800UniProt:M1CW05MapMan:3.13.6.1
Description
Rhamnose biosynthetic enzyme 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029550]
Coordinates
chr8:+:44860454..44862619
Molecular Weight (calculated)
73832.6 Da
IEP (calculated)
7.368
GRAVY (calculated)
-0.312
Length
654 amino acids
Sequence
(BLAST)
001: MSSEPAPYVP KNVLITGAAG FIPSHVTNRL TKLYPNYRIV ALDKLDYCSS LKNLEPSYSC PNFKFVKADI TSADLINHLL VEEKIDTIMH FAAQTHVDNS
101: FGNSFEFTIN NIYGTHVLLE ACKLTKSIKR FIHVSTDEVY GETDLETDIG NPEASQLLPT NPYSATKAGA EMLVMAYNRS YGLPTITTRG NNVYGPNQFP
201: EKLIPKFIIL AMKGERLPIH GDGTNVRSYL YSADVAEAFD VILHKGVIGH VYNIGTKKER AVLDVAADIC KLFGKNAQEV IELVQDRPFN DQRYFLDDQK
301: LKKLGWQERT TWEAGLKMTL DWYTKNPDWW GDITGALHPH PRISNIVPSH DEGCLLQLVK RSNKGCGSDL KFLIYGKTGW IGGLLGKICD ERGISYEYGL
401: GRLQDRSSLM QDIIRVKPTH VFNAAGVTGR PNVDWCESHK AETIRTNVAG TLTLADICRE ADILVMNFAT GCIFEYDERH PLGSGIGFKE EDKPNFTGSF
501: YSKTKAMVEE LLKEYDNVCT LRVRMPISSD LSNPRNFITK ITRYDKVVNI PNSMTVLDEL LPISIEMAKR NCRGIWNFTN PGVVSHNEIL GMYKDYIDPK
601: FKWQNFDLQE QAKVIVAPRS NNELDMTKLK KEFPELLSIK DSIIKYVFGP NKKT
Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.