Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- golgi 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g080140.2.1 | Tomato | extracellular | 95.68 | 95.68 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 88.04 | 87.75 |
| CDY45969 | Canola | cytosol | 84.72 | 85.86 |
| Bra027005.1-P | Field mustard | cytosol | 84.39 | 85.52 |
| CDY45471 | Canola | cytosol | 84.39 | 85.52 |
| AT1G63000.1 | Thale cress | cytosol | 84.39 | 84.39 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 83.39 | 83.67 |
| TraesCS6A01G257500.1 | Wheat | peroxisome | 83.06 | 83.33 |
| TraesCS6B01G267600.1 | Wheat | peroxisome | 83.06 | 83.33 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 74.75 | 80.94 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 81.06 | 79.48 |
| Os02t0678400-01 | Rice | plasma membrane | 82.06 | 79.42 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 80.4 | 79.08 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 80.4 | 79.08 |
| Bra019776.1-P | Field mustard | cytosol | 83.72 | 78.5 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 82.72 | 78.06 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 83.39 | 77.71 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 79.07 | 77.52 |
| CDX98052 | Canola | cytosol | 81.4 | 75.85 |
| PGSC0003DMT400054754 | Potato | cytosol, mitochondrion, plastid | 80.4 | 35.91 |
| PGSC0003DMT400018192 | Potato | cytosol, mitochondrion, plastid | 80.07 | 35.76 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 76.08 | 35.02 |
| PGSC0003DMT400059216 | Potato | cytosol | 2.66 | 5.33 |
| PGSC0003DMT400031994 | Potato | golgi | 4.98 | 4.27 |
| PGSC0003DMT400007898 | Potato | cytosol | 4.32 | 3.7 |
| PGSC0003DMT400041159 | Potato | golgi, mitochondrion | 4.65 | 3.61 |
| PGSC0003DMT400012829 | Potato | cytosol, extracellular, golgi | 3.99 | 3.45 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 4.98 | 3.35 |
| PGSC0003DMT400080637 | Potato | golgi | 4.32 | 3.25 |
| PGSC0003DMT400010106 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 4.65 | 3.14 |
| PGSC0003DMT400024810 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 4.32 | 2.99 |
| PGSC0003DMT400018060 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 4.32 | 2.99 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 4.32 | 2.86 |
| PGSC0003DMT400020223 | Potato | endoplasmic reticulum | 3.99 | 2.78 |
| PGSC0003DMT400054459 | Potato | mitochondrion | 3.65 | 2.64 |
| PGSC0003DMT400029181 | Potato | cytosol, golgi, peroxisome | 3.65 | 2.59 |
| PGSC0003DMT400066897 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 3.65 | 2.55 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 3.65 | 2.53 |
| PGSC0003DMT400059215 | Potato | plastid | 1.0 | 1.35 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058533 | EnsemblPlantsGene:PGSC0003DMG402022737 | EntrezGene:102601196 | Gene3D:3.40.50.720 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:RmlD-like-bd | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF405 | PFAM:PF04321 |
| PGSC:PGSC0003DMG402022737 | RefSeq:XP_006358852.1 | SUPFAM:SSF51735 | UniParc:UPI0002966B34 | UniProt:M1C2T9 | MapMan:3.13.6.1 |
Description
UDP-L-rhamnose synthase [Source:PGSC_GENE;Acc:PGSC0003DMG402022737]
Coordinates
chr8:+:53835360..53837441
Molecular Weight (calculated)
33800.4 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.356
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFPANGSSQ DKPYKFLIYG RTGWIGGLLG KLCEAQGIEY EYGSGRLENR SSLESDLTTV KPTHVFNAAG VTGRPNVDWC ESHKVETIRA NVVGTLTLAD
101: VCREKGLILI NYATGCIFEY DSGHKLGSGN GFKEEDTPNF IGSFYSKTKA MVEELLKNYD NVCTLRVRMP ISADLTNPRN FITKISRYEK VVDIPNSMTI
201: LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPSFSWKNF TIEEQAKVIV APRSNNELDA SKLSKEFPEM KSIKESLIEN VFKPNRKTPV
301: A
101: VCREKGLILI NYATGCIFEY DSGHKLGSGN GFKEEDTPNF IGSFYSKTKA MVEELLKNYD NVCTLRVRMP ISADLTNPRN FITKISRYEK VVDIPNSMTI
201: LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPSFSWKNF TIEEQAKVIV APRSNNELDA SKLSKEFPEM KSIKESLIEN VFKPNRKTPV
301: A
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
Arabidopsis Description
NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.