Factsheet for PGSC0003DMT400080637

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1
golgi 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g030230.2.1	Tomato	mitochondrion	95.5	91.83
PGSC0003DMT400054459	Potato	mitochondrion	89.5	85.85
Os04t0618200-02	Rice	golgi	79.5	81.33
CDY71965	Canola	cytosol, mitochondrion	47.75	80.25
KRH36892	Soybean	golgi, mitochondrion	81.75	78.8
KRH11871	Soybean	golgi, plastid	81.5	78.55
GSMUA_Achr11P...	Banana	cytosol, golgi	76.5	78.26
KRH59194	Soybean	golgi, mitochondrion	81.0	77.88
KRH43065	Soybean	golgi, mitochondrion, plastid	80.75	77.64
AT4G20460.1	Thale cress	golgi, mitochondrion	79.75	77.62
HORVU7Hr1G074300.2	Barley	golgi	78.5	77.53
CDX78998	Canola	mitochondrion	79.5	77.37
Os08t0129700-01	Rice	mitochondrion	78.5	77.34
GSMUA_Achr3P23390_001	Banana	mitochondrion	80.5	77.22
EER95001	Sorghum	mitochondrion	78.5	77.15
CDX82768	Canola	mitochondrion	79.25	77.13
PGSC0003DMT400041159	Potato	golgi, mitochondrion	74.75	77.06
GSMUA_Achr11P...	Banana	mitochondrion	80.25	76.98
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	77.75	76.79
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	78.75	76.46
TraesCS7A01G311100.1	Wheat	golgi	77.25	76.3
TraesCS2B01G482000.1	Wheat	golgi	78.25	75.97
CDY29113	Canola	golgi	78.25	75.97
Bra027557.1-P	Field mustard	golgi	78.0	75.73
TraesCS2A01G460400.1	Wheat	unclear	78.0	75.73
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	78.0	75.73
KXG27129	Sorghum	mitochondrion, plastid	78.5	75.66
GSMUA_Achr8P33320_001	Banana	mitochondrion	78.75	75.54
CDY13102	Canola	golgi	77.75	75.49
Bra020917.1-P	Field mustard	golgi, mitochondrion	77.5	75.43
TraesCS7B01G210700.2	Wheat	golgi	77.75	75.3
Bra033746.1-P	Field mustard	golgi	77.5	75.24
CDY49015	Canola	golgi	77.25	75.0
CDY49498	Canola	golgi	77.0	74.76
GSMUA_Achr4P31860_001	Banana	mitochondrion	77.0	74.04
Os07t0139400-01	Rice	plasma membrane	77.5	73.63
TraesCS5A01G291300.1	Wheat	golgi	77.5	73.63
HORVU5Hr1G077110.3	Barley	mitochondrion	77.25	73.4
TraesCS5B01G290300.1	Wheat	mitochondrion	77.25	73.4
TraesCS5D01G298700.1	Wheat	mitochondrion	77.25	73.4
AT5G44480.1	Thale cress	mitochondrion	78.5	72.02
EER95854	Sorghum	mitochondrion, plastid	76.5	71.16
Bra013466.1-P	Field mustard	mitochondrion	78.25	67.6
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	38.0	43.68
PGSC0003DMT400031994	Potato	golgi	36.75	41.88
PGSC0003DMT400007898	Potato	cytosol	33.5	38.18
Zm00001d017999_P002	Maize	mitochondrion	29.25	37.62
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	32.25	37.28
PGSC0003DMT400059215	Potato	plastid	14.75	26.46
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	25.25	22.65
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	23.75	22.35
PGSC0003DMT400020223	Potato	endoplasmic reticulum	24.0	22.27
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	23.75	21.89
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	23.75	21.84
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	23.5	20.98
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	22.5	20.88
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	22.25	20.46
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	23.0	20.26
PGSC0003DMT400059216	Potato	cytosol	6.25	16.67
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	22.0	13.46
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	21.5	12.76
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	20.75	12.31
PGSC0003DMT400058533	Potato	cytosol	3.25	4.32

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005575	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	UniProt:M1D3S1	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	EnsemblPlantsGene:PGSC0003DMG400031399	PGSC:PGSC0003DMG400031399	EnsemblPlants:PGSC0003DMT400080637	PANTHER:PTHR43349
PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI000296DC28
SEG:seg	:	:	:	:	:

Description

UDP-arabinose 4-epimerase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031399]

Coordinates

chr2:-:14373865..14379239

Molecular Weight (calculated)

43858.7 Da

IEP (calculated)

8.799

GRAVY (calculated)

-0.223

Length

400 amino acids

Sequence
(BLAST)

001: MDYADPKKKN NFVGKILMAA ILTALCILML KQSPDFNPPT AFSRHEPGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD NLSRGNLGAV RILQELFPEP
101: GRFQFIYADL GDAKVVHKIF SQNAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLTVLE AMATRGVPTL IYSSTCATYG EPEKMPITEE TPQQPINPYG
201: KAKKMAEEII LDFHKNSNMS VMILRYFNVI GSDPNGRLGE APRPELREHG RISGACFDAA RGIIPGLKVR GIDYKTADGT CIRDYIDVTD LVDAHVKALE
301: KARPGKVGIY NVGTGRGRSV KEFVEACKTA TGVPIKVDFL PRRPGDYAEV YSDPTKIRNE LNWTAKYTDL QESLQIAWRW QKSHLNGYGL SVAGGGGGGG

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.