Factsheet for PGSC0003DMT400024810

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
endoplasmic reticulum 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	95.4	95.4
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	88.74	89.56
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	88.05	88.05
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	85.75	86.14
VIT_15s0048g00330.t01	Wine grape	plastid	84.37	85.95
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	83.68	84.65
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	82.76	83.72
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	82.76	83.72
KRH76209	Soybean	endoplasmic reticulum, plastid	83.45	82.88
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	82.53	82.72
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	82.76	82.19
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	84.83	79.35
PGSC0003DMT400059216	Potato	cytosol	26.21	76.0
PGSC0003DMT400059215	Potato	plastid	37.93	73.99
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	72.18	70.4
PGSC0003DMT400020223	Potato	endoplasmic reticulum	67.36	67.98
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	64.6	66.12
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	65.98	63.22
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	62.76	62.9
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	64.6	62.72
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	20.46	25.57
PGSC0003DMT400007898	Potato	cytosol	20.46	25.36
PGSC0003DMT400031994	Potato	golgi	19.54	24.22
PGSC0003DMT400080637	Potato	golgi	20.46	22.25
PGSC0003DMT400041159	Potato	golgi, mitochondrion	18.85	21.13
PGSC0003DMT400054459	Potato	mitochondrion	19.77	20.62
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	20.92	13.91
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	21.15	13.65
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	20.69	13.35
PGSC0003DMT400058533	Potato	cytosol	2.99	4.32

Protein Annotations

EntrezGene:102586200	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	UniProt:M1AKN0	InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epim	PFAM:PF01370	EnsemblPlantsGene:PGSC0003DMG400009591	PGSC:PGSC0003DMG400009591	EnsemblPlants:PGSC0003DMT400024810	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000294AF47	RefSeq:XP_006359203.1
SEG:seg	:	:	:	:	:

Description

UDP-glucuronate 4-epimerase 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400009591]

Coordinates

chr10:-:40655190..40657105

Molecular Weight (calculated)

48135.6 Da

IEP (calculated)

10.282

GRAVY (calculated)

-0.218

Length

435 amino acids

Sequence
(BLAST)

001: MSSMKHIDNI PSTPGKFKEK SSYNRLRLHF SIAKLTFWSF VFLGLIFVCF FRSPSSSSSP ASSDLSRRSL RTSSYDGPAW EKRIKASAKI RSRNGISVLV
101: TGAAGFVGTH VSSALKRRGD GVVGLDNFND YYDPSLKRAR QTLLEGAGVY IVEGDINDVT LLKKLFDVVQ FNHVMHLAAQ AGVRYAMENP SSYVHSNIAG
201: LVNLLEFCKN ANPQPSIVWA SSSSVYGLNT KVPFSESDRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTRDILKGKS
301: ISIFEGANHG TVARDFTYID DIVKGCLGAL DTAEKSTGSG GKKKGPAQLR VFNLGNTSPV PVSDLVTILE RLLKVKAKRA LMKLPRNGDV QFTHANISFA
401: QRELGYKPTT YLQTGLKKFV RWYLSYYVDG KKSAQ

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.