Factsheet for PGSC0003DMT400066897

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091200.2.1	Tomato	nucleus	99.3	98.39
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	90.49	89.66
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	89.56	88.74
VIT_15s0048g00330.t01	Wine grape	plastid	86.31	87.12
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	87.24	86.84
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	85.15	85.35
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	85.15	85.35
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	85.15	85.35
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	85.61	85.02
KRH76209	Soybean	endoplasmic reticulum, plastid	85.85	84.47
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	85.61	84.25
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	86.77	80.43
PGSC0003DMT400059216	Potato	cytosol	26.45	76.0
PGSC0003DMT400059215	Potato	plastid	38.98	75.34
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	74.71	72.2
PGSC0003DMT400020223	Potato	endoplasmic reticulum	66.59	66.59
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	64.73	65.65
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	66.59	63.22
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	65.43	62.95
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	62.65	62.21
PGSC0003DMT400007898	Potato	cytosol	20.88	25.64
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	20.19	25.0
PGSC0003DMT400031994	Potato	golgi	19.26	23.65
PGSC0003DMT400080637	Potato	golgi	20.88	22.5
PGSC0003DMT400041159	Potato	golgi, mitochondrion	18.79	20.88
PGSC0003DMT400054459	Potato	mitochondrion	19.95	20.62
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	21.11	13.5
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	20.42	13.46
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	20.65	13.2
PGSC0003DMT400058533	Potato	cytosol	2.55	3.65

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	UniProt:M1CGC8	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim
PFAM:PF01370	EnsemblPlantsGene:PGSC0003DMG400026005	PGSC:PGSC0003DMG400026005	EnsemblPlants:PGSC0003DMT400066897	PRINTS:PR01713	PANTHER:PTHR43574
PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000295372B	SEG:seg	:

Description

UDP-glucuronate 4-epimerase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026005]

Coordinates

chr1:+:70524032..70526177

Molecular Weight (calculated)

47651.3 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.184

Length

431 amino acids

Sequence
(BLAST)

001: MHIDNIPSTP GKFKMEKSPY NRLRMHFSLA KLTFWSFVFF GLIFVFFYRS PASSSSVSSD LSRRSLRTSS YGGPAWEKRI KASAKVRSRN GISVLVTGAA
101: GFVGTHVSVA LKRRGDGVLG LDNFNDYYDP SLKRARQALL ERTGVYVVEG DINDATLLKK LFDIVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGLVNV
201: LEICKSVNPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKSIPIF
301: EAANHGTVAR DFTYIDDIVK GCLAALDTAE KSTGSGGKKK GAAQLRVFNL GNTSPVPVSD LVSILERLLK VKAKRLVMKL PRNGDVPFTH ANISSAHKEL
401: GYKPTTDLQT GLKKFVRWYL NYYGNGKKSA Q

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.