Factsheet for TraesCS2B01G482000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	99.51	99.51
TraesCS2A01G460400.1	Wheat	unclear	99.27	99.27
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	99.27	99.27
KXG27129	Sorghum	mitochondrion, plastid	91.02	90.36
Os04t0618200-02	Rice	golgi	84.47	89.0
Solyc07g043550.2.1	Tomato	cytosol, unclear	60.19	82.12
CDY71965	Canola	cytosol, mitochondrion	46.84	81.09
AT2G34850.2	Thale cress	cytosol	46.36	80.93
KRH36892	Soybean	golgi, mitochondrion	79.13	78.55
Bra032409.1-P	Field mustard	mitochondrion	79.85	78.52
TraesCS7B01G210700.2	Wheat	golgi	78.64	78.45
CDY02312	Canola	mitochondrion	79.85	78.33
CDY09555	Canola	mitochondrion	79.85	78.33
PGSC0003DMT400080637	Potato	golgi	75.97	78.25
AT1G30620.4	Thale cress	golgi, mitochondrion	79.13	77.8
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	78.64	77.7
GSMUA_Achr8P33320_001	Banana	mitochondrion	78.4	77.46
KRH11871	Soybean	golgi, plastid	77.67	77.11
PGSC0003DMT400054459	Potato	mitochondrion	77.67	76.74
AT4G20460.1	Thale cress	golgi, mitochondrion	76.46	76.64
KRH59194	Soybean	golgi, mitochondrion	77.18	76.44
CDY52524	Canola	golgi	78.64	76.42
Solyc02g030230.2.1	Tomato	mitochondrion	76.94	76.2
CDX78998	Canola	mitochondrion	75.97	76.16
PGSC0003DMT400041159	Potato	golgi, mitochondrion	71.6	76.03
TraesCS5B01G290300.1	Wheat	mitochondrion	77.67	76.01
CDX82768	Canola	mitochondrion	75.73	75.91
CDY31644	Canola	golgi	77.91	75.71
KRH43065	Soybean	golgi, mitochondrion, plastid	76.21	75.48
Bra020917.1-P	Field mustard	golgi, mitochondrion	74.27	74.45
Bra027557.1-P	Field mustard	golgi	74.03	74.03
CDY29113	Canola	golgi	74.03	74.03
Solyc12g006410.1.1	Tomato	unclear	71.6	73.93
Bra033746.1-P	Field mustard	golgi	73.79	73.79
CDY13102	Canola	golgi	73.79	73.79
CDY49015	Canola	golgi	73.79	73.79
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	90.05	73.47
CDY49498	Canola	golgi	73.06	73.06
Bra005387.1-P	Field mustard	golgi, mitochondrion	78.16	70.93
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	77.67	70.33
AT5G44480.1	Thale cress	mitochondrion	74.03	69.95
Bra013466.1-P	Field mustard	mitochondrion	74.27	66.09
TraesCS1B01G478400.1	Wheat	endoplasmic reticulum, golgi	36.41	42.37
TraesCS5B01G181300.1	Wheat	plastid	35.68	39.2
TraesCS5B01G315700.1	Wheat	cytosol	33.25	37.23
TraesCS6B01G385900.1	Wheat	plastid	21.84	20.55
TraesCS1B01G327200.1	Wheat	peroxisome	17.96	20.11
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	21.36	19.86
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	20.87	17.99
TraesCS7B01G153900.1	Wheat	plastid	21.36	17.89
TraesCS4B01G223700.1	Wheat	plastid	20.39	17.11
TraesCS4B01G205100.3	Wheat	mitochondrion	20.39	12.32
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	19.9	12.29
TraesCS6B01G267600.1	Wheat	peroxisome	2.91	4.0

Protein Annotations

EnsemblPlants:TraesCS2B01G482000.1	EnsemblPlantsGene:TraesCS2B01G482000	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:UDP_G4E	KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14
PFAM:PF16363	SUPFAM:SSF51735	TIGR:cd05247	TIGRFAMs:TIGR01179	MapMan:3.13.7.1	:

Description

No Description!

Coordinates

chr2B:+:680041748..680044849

Molecular Weight (calculated)

44992.8 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.280

Length

412 amino acids

Sequence
(BLAST)

001: MPTTPRSRSQ ARTTRSWILS GMDFGDTRRK PNFAGKIAVA AALTVMCILV LKQSPGFGGT SVFSRHETGV THVLVTGGAG YIGSHATLRL LTDNYRVTIV
101: DNLSRGNMGA VRALQRLFPE PGRLQFIYTD LGDPKAVNKM FSENAFDAVM HFAAVAYVGE STQEPLRYYH NITSNTLTVL EAMAAHNVKT LIYSSTCATY
201: GEPDTMPIVE TTPQIPINPY GKAKKMSEDI ILDFSKKSNM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ASGIIPGLKV RGTDYPTADG
301: TCVRDYIDVT DLVDAHVKAL GKAEPNKVGI YNVGTGKGRS VKEFVEACKK ATGATIKVDY LDRRPGDYAE VYSNPAKIRD ELNWTAQHTD LRESLATAWK
401: WQKAHPGGYG SA

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.