Factsheet for Bra020917.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4
golgi 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71965	Canola	cytosol, mitochondrion	57.42	99.16
AT4G20460.1	Thale cress	golgi, mitochondrion	95.62	95.62
Bra033746.1-P	Field mustard	golgi	83.45	83.25
Bra027557.1-P	Field mustard	golgi	82.73	82.52
Bra013466.1-P	Field mustard	mitochondrion	92.7	82.29
Bra032409.1-P	Field mustard	mitochondrion	80.54	79.0
Os04t0618200-02	Rice	golgi	73.97	77.75
PGSC0003DMT400080637	Potato	golgi	75.43	77.5
KRH36892	Soybean	golgi, mitochondrion	77.62	76.87
KRH43065	Soybean	golgi, mitochondrion, plastid	77.62	76.68
KRH11871	Soybean	golgi, plastid	77.13	76.39
Solyc02g030230.2.1	Tomato	mitochondrion	76.89	75.96
GSMUA_Achr11P...	Banana	cytosol, golgi	72.26	75.96
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	76.89	75.78
KRH59194	Soybean	golgi, mitochondrion	76.64	75.72
GSMUA_Achr3P23390_001	Banana	mitochondrion	76.64	75.54
PGSC0003DMT400054459	Potato	mitochondrion	76.4	75.3
GSMUA_Achr8P33320_001	Banana	mitochondrion	76.16	75.06
GSMUA_Achr11P...	Banana	mitochondrion	76.16	75.06
EER95001	Sorghum	mitochondrion	74.21	74.94
Os08t0129700-01	Rice	mitochondrion	73.72	74.63
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	74.7	74.51
HORVU5Hr1G077110.3	Barley	mitochondrion	76.16	74.35
TraesCS2A01G460400.1	Wheat	unclear	74.45	74.27
TraesCS2B01G482000.1	Wheat	golgi	74.45	74.27
TraesCS5A01G291300.1	Wheat	golgi	75.91	74.11
HORVU7Hr1G074300.2	Barley	golgi	72.99	74.07
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	72.99	74.07
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	74.21	74.03
TraesCS5D01G298700.1	Wheat	mitochondrion	75.67	73.87
Os07t0139400-01	Rice	plasma membrane	75.67	73.87
TraesCS5B01G290300.1	Wheat	mitochondrion	75.67	73.87
KXG27129	Sorghum	mitochondrion, plastid	74.45	73.73
TraesCS7A01G311100.1	Wheat	golgi	72.51	73.58
GSMUA_Achr4P31860_001	Banana	mitochondrion	74.21	73.32
TraesCS7B01G210700.2	Wheat	golgi	73.24	72.88
EER95854	Sorghum	mitochondrion, plastid	75.67	72.33
Bra005387.1-P	Field mustard	golgi, mitochondrion	78.35	70.93
Bra027732.1-P	Field mustard	golgi	34.31	41.11
Bra019257.1-P	Field mustard	plastid	34.79	41.09
Bra013744.1-P	Field mustard	cytosol, golgi	34.55	40.8
Bra035262.1-P	Field mustard	golgi	34.31	40.63
Bra019785.1-P	Field mustard	cytosol	32.12	39.4
Bra016757.1-P	Field mustard	cytosol	32.36	37.89
Zm00001d017999_P002	Maize	mitochondrion	28.22	37.3
Bra027626.1-P	Field mustard	cytosol	31.63	37.04
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	31.14	36.99
Bra039253.1-P	Field mustard	cytosol	30.41	36.02
Bra030933.1-P	Field mustard	cytosol	9.98	22.16
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	23.11	22.14
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	22.63	21.38
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	21.41	20.47
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	21.41	20.47
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	21.17	20.28
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	22.38	20.18
Bra014987.1-P	Field mustard	endoplasmic reticulum	22.14	20.04
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	22.14	19.78
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	20.92	19.77
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	22.63	13.98
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	22.63	13.88
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	22.14	13.68
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	22.14	13.54
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	21.9	13.47
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	20.19	12.89
Bra019776.1-P	Field mustard	cytosol	3.89	4.98
Bra027005.1-P	Field mustard	cytosol	3.16	4.38

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra020917
EnsemblPlants:Bra020917.1	EnsemblPlants:Bra020917.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975
GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853	UniProt:M4DWM3	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI0002545A19	SEG:seg	:	:	:

Description

AT4G20460 (E=1e-223) | NAD-dependent epimerase/dehydratase family protein

Coordinates

chrA08:-:11217837..11219673

Molecular Weight (calculated)

45082.2 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.188

Length

411 amino acids

Sequence
(BLAST)

001: MLSFSRTRSP GRNTSPLAGG MDYLEPKRKS NVMDRLILIV SLTALCITML KNAPSFTSPT SFSLSQEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEA GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKF IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIQVDFL PRRPGDYAEV YSDPAKILRD LNWSARFTNL QESLEVAWKW
401: QKTHPHGYAS S

Best Arabidopsis Sequence Match ( AT4G20460.1 )
(BLAST)

001: MLSFSRARSQ GRNTRPLGGG MEYLEPKRKS NVMGKIILVV SLTALCIFML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW
401: QKTHPHGYAS S

Arabidopsis Description

Probable UDP-arabinose 4-epimerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUN3]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.