Factsheet for Bra021578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20084	Canola	cytosol, mitochondrion, peroxisome	99.22	99.22
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	95.03	92.03
AT3G14790.2	Thale cress	mitochondrion	93.94	90.7
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	90.84	87.57
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	89.6	86.77
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	83.7	83.05
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	86.34	82.99
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	84.78	81.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.97	80.97
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	83.39	79.91
Os03t0278200-01	Rice	nucleus, plasma membrane	83.54	79.7
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	83.07	79.61
EER95086	Sorghum	cytosol, mitochondrion, plastid	83.07	79.61
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	76.4	79.23
Bra027005.1-P	Field mustard	cytosol	36.49	79.12
TraesCS4A01G099200.1	Wheat	cytosol	82.92	79.11
Zm00001d028654_P002	Maize	cytosol	81.99	78.57
TraesCS4D01G206000.1	Wheat	mitochondrion	82.92	78.3
TraesCS4B01G205100.3	Wheat	mitochondrion	82.76	78.15
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	77.64	76.1
Bra030933.1-P	Field mustard	cytosol	21.43	74.59
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	75.16	74.01
Solyc08g069110.2.1	Tomato	unclear	74.69	73.89
HORVU4Hr1G059120.2	Barley	plastid	82.61	73.58
Bra019776.1-P	Field mustard	cytosol	36.65	73.52
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	68.63	73.06
KRH16155	Soybean	cytosol	73.45	72.21
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.2	72.2
Bra027732.1-P	Field mustard	golgi	12.89	24.2
Bra019257.1-P	Field mustard	plastid	12.89	23.85
Bra016757.1-P	Field mustard	cytosol	12.42	22.79
Bra013744.1-P	Field mustard	cytosol, golgi	12.27	22.7
Bra019785.1-P	Field mustard	cytosol	11.8	22.69
Bra035262.1-P	Field mustard	golgi	12.11	22.48
Bra027626.1-P	Field mustard	cytosol	11.96	21.94
Bra039253.1-P	Field mustard	cytosol	11.65	21.61
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	13.82	20.46
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.51	20.28
Bra020917.1-P	Field mustard	golgi, mitochondrion	12.89	20.19
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	13.35	20.0
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.35	19.77
Bra014987.1-P	Field mustard	endoplasmic reticulum	13.66	19.38
Bra033746.1-P	Field mustard	golgi	12.27	19.17
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.73	19.11
Bra032409.1-P	Field mustard	mitochondrion	12.42	19.09
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.51	19.08
Bra027557.1-P	Field mustard	golgi	12.11	18.93
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	13.51	18.91
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.58	18.84
Bra013466.1-P	Field mustard	mitochondrion	12.73	17.71
Bra005387.1-P	Field mustard	golgi, mitochondrion	12.27	17.4

Protein Annotations

EnsemblPlants:Bra021578.1	EnsemblPlants:Bra021578.1-P	EnsemblPlantsGene:Bra021578	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
SEG:seg	SUPFAM:SSF51735	UniParc:UPI000254418E	UniProt:M4DYI2	MapMan:3.13.6.1	:

Description

AT3G14790 (E=0.0) RHM3, ATRHM3 | RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic

Coordinates

chrA01:-:24390782..24392773

Molecular Weight (calculated)

72617.4 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.433

Length

644 amino acids

Sequence
(BLAST)

001: MTTYKPKNIL ITGAAGFIAS HVANRLVRTY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASDD LTRVDNSFGN SFEFTKNNIY GTHVLLEACK
101: VTGQQIRRFI HVSTDEVYGE TDEDASVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK LIPKFMLLAM NGKPLPIHGD
201: GSNVRSYLYC EDVAEAFEVV LHKGEVNHVY NIGTTRERRV IDVANDISKL FGTDPDSTIQ FVENRPFNDQ RYFLDDQKLK KLGWSERTTW EEGLRKTMEW
301: YTENPDWWGD VTGALLPHPR MLMMPGDRLC DSCDDEHKDV ADGNQTFTVV TPSGDNKTPF KFLIYGRTGW LGGLLGKLCE KQGIAYEYGK GRLEDRASVM
401: ADVRSVKPTH VFNAAGVTGR PNVDWCESHK TETIRANVAG TLTLADVCRE NGLLMMNFAT GCIFEYDAAH PEGSGIGFKE EDKPNFTGSF YSKTKAMVEE
501: LLREYDNVCT LRVRMPISSD LNNPRNFITK ISRYNKVVNI PNSMTILDEL LPISIEMAKR NLRGVWNFTN PGVVSHNEIL EMYKSYIEPG FKWSNFTLEE
601: QAKVIVAARS NNEMDGAKLS KEFPEMLSIK ESLIKYVFEP NKRT

Best Arabidopsis Sequence Match ( AT3G14790.1 )
(BLAST)

001: MATYKPKNIL ITGAAGFIAS HVANRLVRSY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASAD LVNYLLITEE IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDASVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMNG KPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVNHVYNI GTTRERRVID VANDISKLFG IDPDSTIQYV ENRPFNDQRY FLDDQKLKKL
301: GWCERTNWEE GLRKTMEWYT ENPEWWGDVS GALLPHPRML MMPGDRHSDG SDEHKNADGN QTFTVVTPTK AGCSGDKRSL KFLIYGKTGW LGGLLGKLCE
401: KQGIPYEYGK GRLEDRASLI ADIRSIKPSH VFNAAGLTGR PNVDWCESHK TETIRVNVAG TLTLADVCRE NDLLMMNFAT GCIFEYDAAH PEGSGIGFKE
501: EDKPNFTGSF YSKTKAMVEE LLREFDNVCT LRVRMPISSD LNNPRNFITK ISRYNKVVNI PNSMTILDEL LPISIEMAKR NLRGIWNFTN PGVVSHNEIL
601: EMYKSYIEPD FKWSNFNLEE QAKVIVAPRS NNEMDGAKLS KEFPEMLSIK DSLIKYVFEP NKRT

Arabidopsis Description

RHM3Rhamnose biosynthesis 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN83]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.