Factsheet for Bra019785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12780.1	Bra019785.1-P	AT1G12780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69000	Canola	cytosol	99.1	99.1
Bra016757.1-P	Field mustard	cytosol	92.24	88.03
AT1G12780.1	Thale cress	cytoskeleton, cytosol, peroxisome	90.45	86.32
Bra027626.1-P	Field mustard	cytosol	86.87	82.91
Bra039253.1-P	Field mustard	cytosol	84.18	81.27
KRH59827	Soybean	extracellular, golgi	82.69	79.14
KRH41129	Soybean	nucleus	82.09	78.57
VIT_02s0025g04210.t01	Wine grape	cytosol	81.49	78.0
GSMUA_Achr1P18740_001	Banana	cytosol	77.01	72.88
Solyc08g080570.2.1	Tomato	cytosol	75.52	72.08
PGSC0003DMT400007898	Potato	cytosol	75.52	72.08
GSMUA_Achr5P13620_001	Banana	cytosol	74.33	70.94
KXG36042	Sorghum	cytosol	72.54	66.76
Zm00001d021249_P003	Maize	cytosol	71.04	65.56
Bra013744.1-P	Field mustard	cytosol, golgi	66.87	64.37
Bra019257.1-P	Field mustard	plastid	66.57	64.08
Bra035262.1-P	Field mustard	golgi	65.97	63.69
TraesCS5B01G315700.1	Wheat	cytosol	69.55	63.32
Bra027732.1-P	Field mustard	golgi	64.78	63.27
TraesCS5A01G314800.1	Wheat	cytosol	69.25	63.04
TraesCS5D01G321100.1	Wheat	cytosol	68.96	62.6
Os09t0526700-01	Rice	cytosol	66.27	59.52
HORVU5Hr1G080860.10	Barley	mitochondrion	68.96	54.48
Bra032409.1-P	Field mustard	mitochondrion	41.19	32.94
Bra027557.1-P	Field mustard	golgi	40.0	32.52
Bra033746.1-P	Field mustard	golgi	39.7	32.28
Bra020917.1-P	Field mustard	golgi, mitochondrion	39.4	32.12
Bra005387.1-P	Field mustard	golgi, mitochondrion	39.1	28.85
Bra013466.1-P	Field mustard	mitochondrion	39.4	28.51
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	26.87	20.98
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	26.57	20.46
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	25.97	20.28
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	25.97	20.0
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	25.67	20.0
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	26.87	19.57
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	26.57	19.52
Bra014987.1-P	Field mustard	endoplasmic reticulum	26.27	19.38
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	24.48	19.07
Bra030933.1-P	Field mustard	cytosol	10.15	18.38
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	25.07	12.54
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	24.78	12.35
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	24.18	12.13
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	23.88	12.03
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	23.88	12.03
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	22.69	11.8
Bra027005.1-P	Field mustard	cytosol	3.88	4.38
Bra019776.1-P	Field mustard	cytosol	3.58	3.74

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra019785
EnsemblPlants:Bra019785.1	EnsemblPlants:Bra019785.1-P	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016853	GO:GO:0050373	GO:GO:0050662	UniProt:M4DTE2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR43725	PANTHER:PTHR43725:SF9	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI000253EC76

Description

AT1G12780 (E=1e-103) UGE1 | UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization

Coordinates

chrA06:+:4409977..4412079

Molecular Weight (calculated)

37600.2 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.367

Length

335 amino acids

Sequence
(BLAST)

001: MDSSMEQNIL VTGGAGFIGT HTAVQLLKEG FKVSIIDNLD NSVLEAVDRV RELVGPDLSK KLEFILGDLR NKEDIEKLFS KQRFDAVIHF AALKGVGESV
101: GIPRRYYDNN LVGTINLYET MSKYNCKMMV FSSSATVYGE PKKIPCLFLE EIARDIHRAE PEWRIVLLRY FNPVGAHESG RIGEDPKGIP NNLMPYIQQV
201: AVGRQPELNV YGHDYPTKDG SAVRDYIHVM DLADGHIAAL RKLFTDPKIG CTAYNLGTGR GTSVLEMVAA FEKASGKKIP MKLCPRRPGD STVVYASTEK
301: AEKELGWKAK YGVDEMCRDQ WNWTNNNPWG YQKKL

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.