Factsheet for Bra013744.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019785.1-P
Bra035262.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	Bra019785.1-P	AT1G12780.1	21798944
AT4G23920.1	Bra035262.1-P	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47611	Canola	golgi	99.43	99.43
Bra019257.1-P	Field mustard	plastid	93.39	93.39
AT4G23920.1	Thale cress	cytosol	93.68	93.14
Bra035262.1-P	Field mustard	golgi	85.63	85.88
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	78.74	78.74
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	78.45	78.45
Bra027732.1-P	Field mustard	golgi	77.3	78.43
GSMUA_Achr5P09200_001	Banana	golgi	77.59	76.06
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	76.15	75.93
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	75.86	75.64
GSMUA_Achr4P02670_001	Banana	golgi	75.57	75.36
Os09t0323000-01	Rice	cytosol	71.84	67.75
EER98731	Sorghum	plastid	70.69	67.21
TraesCS5B01G181300.1	Wheat	plastid	72.41	67.2
TraesCS5D01G188200.1	Wheat	plastid	72.41	67.2
TraesCS5A01G183100.1	Wheat	plastid	72.41	67.2
Bra019785.1-P	Field mustard	cytosol	64.37	66.87
HORVU5Hr1G055920.8	Barley	plastid	71.84	66.84
Bra016757.1-P	Field mustard	cytosol	66.67	66.1
Zm00001d005598_P001	Maize	plastid	69.25	66.03
Bra027626.1-P	Field mustard	cytosol	64.94	64.39
Zm00001d020093_P002	Maize	golgi	55.17	63.58
Bra039253.1-P	Field mustard	cytosol	62.93	63.11
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	76.72	62.97
Os08t0374800-01	Rice	golgi	72.41	61.76
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	75.29	60.51
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	72.99	60.05
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	72.99	60.05
GSMUA_Achr9P06140_001	Banana	plastid	75.86	50.67
GSMUA_Achr6P26620_001	Banana	plastid	75.0	48.6
Bra033746.1-P	Field mustard	golgi	42.24	35.68
Bra027557.1-P	Field mustard	golgi	41.95	35.44
Bra032409.1-P	Field mustard	mitochondrion	42.24	35.08
Bra020917.1-P	Field mustard	golgi, mitochondrion	40.8	34.55
Bra005387.1-P	Field mustard	golgi, mitochondrion	41.95	32.16
Bra013466.1-P	Field mustard	mitochondrion	40.8	30.67
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	27.87	22.61
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	27.01	21.86
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	27.01	21.61
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	26.15	20.92
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	27.3	20.83
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	25.57	20.75
Bra014987.1-P	Field mustard	endoplasmic reticulum	27.01	20.7
Bra030933.1-P	Field mustard	cytosol	10.92	20.54
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	27.01	20.43
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	24.71	20.0
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	25.29	13.13
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	25.0	12.95
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	24.14	12.63
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	23.56	12.33
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	23.56	12.28
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	22.7	12.27
Bra027005.1-P	Field mustard	cytosol	3.74	4.38
Bra019776.1-P	Field mustard	cytosol	3.45	3.74

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra013744
EnsemblPlants:Bra013744.1	EnsemblPlants:Bra013744.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975
GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853	UniProt:M4DB84	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF11	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI0002545EDF	SEG:seg	:	:	:

Description

AT4G23920 (E=4e-186) UGE2 | UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization

Coordinates

chrA01:+:7533877..7536222

Molecular Weight (calculated)

38348.7 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.211

Length

348 amino acids

Sequence
(BLAST)

001: MVKNVLVTGG AGYIGTHTVL QLLNGGYSVV VVDNHDNSSV IALQRVKKLA GDNGNRLSFH QVDLRDRPAL EKIFSETKFD AVIHFAGLKA VGESVEKPLL
101: YYNNNLFGTV ILLEVMSQYG CKNLVFSSSA TVYGWPKEVP CTEESPISAT NPYGRTKLFI EEICRDVHRS DPEWKIILLR YFNPVGAHPS GYIGEDPLGV
201: PNNLMPYVQQ VAVGRRPHLT VFGTDYNTKD GTGVRDYIHV IDLADGHIAA LRKLDDLKIS CEVYNLGTGN GTSVLEMVAA FEKASGKKIP LVLAGRRPGD
301: AEIVYASTEK AERELNWKAK YGIEDMCRDL WNWASNNPYG YASSNGSS

Best Arabidopsis Sequence Match ( AT4G23920.1 )
(BLAST)

001: MAKSVLVTGG AGYIGSHTVL QLLEGGYSAV VVDNYDNSSA ASLQRVKKLA GENGNRLSFH QVDLRDRPAL EKIFSETKFD AVIHFAGLKA VGESVEKPLL
101: YYNNNIVGTV TLLEVMAQYG CKNLVFSSSA TVYGWPKEVP CTEESPISAT NPYGRTKLFI EEICRDVHRS DSEWKIILLR YFNPVGAHPS GYIGEDPLGV
201: PNNLMPYVQQ VAVGRRPHLT VFGTDYKTKD GTGVRDYIHV MDLADGHIAA LRKLDDLKIS CEVYNLGTGN GTSVLEMVAA FEKASGKKIP LVMAGRRPGD
301: AEVVYASTEK AERELNWKAK NGIEEMCRDL WNWASNNPYG YNSSSNGSSS

Arabidopsis Description

UGE2UDP-glucose 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.