Factsheet for GSMUA_Achr9P06140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02670_001	Banana	golgi	55.28	82.52
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	54.7	81.66
GSMUA_Achr5P09200_001	Banana	golgi	55.28	81.13
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	54.13	80.8
Bra019257.1-P	Field mustard	plastid	51.82	77.59
AT4G10960.1	Thale cress	golgi	51.82	76.92
CDX86828	Canola	golgi	50.86	76.37
Bra035262.1-P	Field mustard	golgi	50.86	76.37
GSMUA_Achr6P26620_001	Banana	plastid	78.69	76.35
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	50.86	76.15
CDY47611	Canola	golgi	50.86	76.15
CDY40862	Canola	cytosol, golgi	50.67	76.08
CDY03506	Canola	cytosol, golgi	50.67	75.86
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	50.67	75.86
CDY50431	Canola	cytosol	50.67	75.86
Bra013744.1-P	Field mustard	cytosol, golgi	50.67	75.86
AT4G23920.1	Thale cress	cytosol	50.86	75.71
AT1G64440.1	Thale cress	cytosol, golgi	50.48	75.57
Bra027732.1-P	Field mustard	golgi	49.52	75.22
CDY47846	Canola	golgi	49.52	75.22
CDY08378	Canola	golgi	49.52	74.78
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	59.5	73.11
Os09t0323000-01	Rice	cytosol	50.48	71.27
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	58.35	70.21
Zm00001d005598_P001	Maize	plastid	49.14	70.14
EER98731	Sorghum	plastid	49.14	69.95
HORVU5Hr1G055920.8	Barley	plastid	50.1	69.79
TraesCS5A01G183100.1	Wheat	plastid	49.71	69.07
TraesCS5B01G181300.1	Wheat	plastid	49.71	69.07
TraesCS5D01G188200.1	Wheat	plastid	49.71	69.07
GSMUA_Achr5P13620_001	Banana	cytosol	45.87	68.09
GSMUA_Achr1P18740_001	Banana	cytosol	46.07	67.8
Zm00001d020093_P002	Maize	golgi	38.2	65.89
Os08t0374800-01	Rice	golgi	51.25	65.44
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	51.25	63.12
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	51.25	63.12
GSMUA_Achr11P...	Banana	cytosol, golgi	28.6	38.11
GSMUA_Achr11P...	Banana	mitochondrion	29.17	36.45
GSMUA_Achr8P33320_001	Banana	mitochondrion	28.79	35.97
GSMUA_Achr3P23390_001	Banana	mitochondrion	28.6	35.73
GSMUA_Achr4P31860_001	Banana	mitochondrion	28.41	35.58
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	16.31	20.99
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	16.31	20.53
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	15.74	20.3
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	15.93	20.0
GSMUA_Achr5P25290_001	Banana	mitochondrion	4.41	19.83
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	16.12	19.53
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	16.7	18.95
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	17.27	18.56
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	15.74	18.51
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	15.74	18.51
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	15.74	18.47
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	16.7	17.03
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	12.48	16.88
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	16.12	12.94
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	10.94	12.34
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.82	11.32
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	13.44	11.27
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	12.86	11.07
GSMUA_Achr4P29070_001	Banana	cytosol	1.15	9.09
GSMUA_Achr4P02550_001	Banana	mitochondrion	6.14	7.02
GSMUA_Achr5P10430_001	Banana	cytosol	2.3	3.92
GSMUA_Achr1P03840_001	Banana	cytosol	2.11	3.59
GSMUA_Achr4P29060_001	Banana	cytosol	1.34	3.2

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr9G06140_001	EnsemblPlants:GSMUA_Achr9P06140_001	EnsemblPlants:GSMUA_Achr9T06140_001	UniProt:M0TXX3	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF5	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI0002955378	:	:	:	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr9G06140_001]

Coordinates

chr9:-:3939820..3946594

Molecular Weight (calculated)

56961.9 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.288

Length

521 amino acids

Sequence
(BLAST)

001: MAVRDHLRVY IPSSLAPGSQ YRSLVSSHLC SPPTRSAFLS SVIESSLIRL RRSADPMPSP PAVARTILVT GGAGYIGSHT VLQLLKGGFR TVVVDNLDNS
101: SEVAVERVRE LAGEFGKNLV FHRVDLRDRE ALEKVFSSTT FDAVIHFAGL KAVGESVKKP LMYYNNNLIG TINLFEVMVA YGCKKLVFSS SATVYGWPKE
201: VPCTEEVPLC AMNPYGRTKL MTEDICRDIC QGDNDWDIIL LRYFNPVGAH PSGCIGEDPQ GIPNNLMPFV QQVAVGRRPA LTVFGNDYST KDGTGVRDYI
301: HVIDLADGHI AALQKLFEGS HIGCEAYNLG SGKGTSVLEM VAAFEKASGK KIPLVMAERR PGDAETVYAS IAKAEKELHW KAKYDIEEMC RDQWNWASKN
401: PWGYKSPETT NDKHLTCGSP ETINGKLPTY ALPKIANGRL CTTGSLGNSN GKHHIYGAPK IATGKHPTFG SSETGNVHAS NRLPRTTNGK HHSYGSLETV
501: NGVHPTYRSF QIANGEYPTL E

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.