Factsheet for GSMUA_Achr6P22620_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

cytosol 3
mitochondrion 3
golgi 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	90.83	90.83
GSMUA_Achr5P09200_001	Banana	golgi	87.97	86.48
GSMUA_Achr4P02670_001	Banana	golgi	84.24	84.24
AT4G10960.1	Thale cress	golgi	77.94	77.49
Bra019257.1-P	Field mustard	plastid	77.08	77.3
AT4G23920.1	Thale cress	cytosol	76.79	76.57
CDY47611	Canola	golgi	76.22	76.44
Bra013744.1-P	Field mustard	cytosol, golgi	75.93	76.15
CDY03506	Canola	cytosol, golgi	75.93	76.15
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	75.64	75.86
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	75.64	75.86
Bra027732.1-P	Field mustard	golgi	74.21	75.51
CDY47846	Canola	golgi	74.21	75.51
CDY40862	Canola	cytosol, golgi	75.07	75.5
CDX86828	Canola	golgi	75.07	75.5
Bra035262.1-P	Field mustard	golgi	75.07	75.5
CDY50431	Canola	cytosol	75.07	75.29
CDY08378	Canola	golgi	74.21	75.07
AT1G64440.1	Thale cress	cytosol, golgi	74.79	75.0
Os09t0323000-01	Rice	cytosol	75.64	71.54
EER98731	Sorghum	plastid	73.93	70.49
HORVU5Hr1G055920.8	Barley	plastid	75.36	70.32
Zm00001d005598_P001	Maize	plastid	73.35	70.14
TraesCS5D01G188200.1	Wheat	plastid	75.07	69.87
TraesCS5A01G183100.1	Wheat	plastid	75.07	69.87
TraesCS5B01G181300.1	Wheat	plastid	75.07	69.87
GSMUA_Achr5P13620_001	Banana	cytosol	67.91	67.52
GSMUA_Achr1P18740_001	Banana	cytosol	67.62	66.67
Zm00001d020093_P002	Maize	golgi	57.31	66.23
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	79.66	65.57
Os08t0374800-01	Rice	golgi	75.93	64.95
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	78.51	63.28
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	75.64	62.41
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	75.64	62.41
GSMUA_Achr9P06140_001	Banana	plastid	81.66	54.7
GSMUA_Achr6P26620_001	Banana	plastid	81.95	53.26
GSMUA_Achr11P...	Banana	cytosol, golgi	42.98	38.36
GSMUA_Achr11P...	Banana	mitochondrion	43.84	36.69
GSMUA_Achr4P31860_001	Banana	mitochondrion	43.27	36.3
GSMUA_Achr8P33320_001	Banana	mitochondrion	42.69	35.73
GSMUA_Achr3P23390_001	Banana	mitochondrion	42.12	35.25
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	23.5	20.25
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	23.5	19.81
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	22.92	19.8
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	23.21	19.52
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	25.21	19.17
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	23.21	18.84
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	23.5	18.51
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	23.21	18.28
GSMUA_Achr5P25290_001	Banana	mitochondrion	6.02	18.1
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	22.64	17.79
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	23.78	17.11
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	18.05	16.36
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	23.21	15.85
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	25.21	13.56
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	15.76	11.9
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	21.49	11.79
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	20.63	11.59
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	20.06	11.57
GSMUA_Achr4P02550_001	Banana	mitochondrion	8.88	6.8
GSMUA_Achr4P29070_001	Banana	cytosol	1.15	6.06
GSMUA_Achr5P10430_001	Banana	cytosol	2.87	3.27
GSMUA_Achr4P29060_001	Banana	cytosol	1.72	2.74
GSMUA_Achr1P03840_001	Banana	cytosol	2.29	2.61

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr6G22620_001	EnsemblPlants:GSMUA_Achr6P22620_001	EnsemblPlants:GSMUA_Achr6T22620_001	UniProt:M0T9B0	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF11	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI000294CA20	SEG:seg	:	:	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22620_001]

Coordinates

chr6:-:20654349..20662359

Molecular Weight (calculated)

38347.2 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.102

Length

349 amino acids

Sequence
(BLAST)

001: MARRVLVTGG AGYIGSHTVL QLLLEGFSVV VVDNLDNSSV VAVQRVAQLA GEFGKNLAFH RFDIRDKEAL EKVFATSKFD AVIHFAGLKA VGESVQKPLI
101: YYENNIIGTI TLLEVMAAHG CKKLVFSSSA TVYGWPKDLP CTEESPLCAM NPYGRTKLMI EEICHDIHHA DGDWKIMLLR YFNPVGAHPS GQIGEDPCGI
201: PNNLMPLVQQ VAVGRRPTLA VFGNDYSTKD GTGVRDYIHV VDLADGHIAA LQKFFEDPNI GCEVYNLGTG KGTSVLEMVA AFEKASGKKI PLVMAGRRPG
301: DAEILYACTV KAEKELSWKA KYGIEEMCRD QWNWATKNPW GYRSPDPPN

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.