Factsheet for Solyc12g055930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g080570.2.1
Solyc12g055930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	Solyc08g080570.2.1	AT1G12780.1	21798944
AT4G23920.1	Solyc12g055930.1.1	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	99.43	99.43
Solyc08g082440.2.1	Tomato	cytosol, golgi	84.2	83.48
Bra019257.1-P	Field mustard	plastid	80.17	80.17
CDY47611	Canola	golgi	79.02	79.02
Bra013744.1-P	Field mustard	cytosol, golgi	78.74	78.74
CDY03506	Canola	cytosol, golgi	78.74	78.74
CDY50431	Canola	cytosol	78.74	78.74
AT4G23920.1	Thale cress	cytosol	79.02	78.57
CDY40862	Canola	cytosol, golgi	77.87	78.1
Bra035262.1-P	Field mustard	golgi	77.59	77.81
CDX86828	Canola	golgi	77.59	77.81
AT4G10960.1	Thale cress	golgi	77.87	77.21
GSMUA_Achr4P02670_001	Banana	golgi	77.01	76.79
GSMUA_Achr5P09200_001	Banana	golgi	77.87	76.34
CDY47846	Canola	golgi	75.0	76.09
Bra027732.1-P	Field mustard	golgi	75.0	76.09
AT1G64440.1	Thale cress	cytosol, golgi	75.86	75.86
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	75.86	75.64
CDY08378	Canola	golgi	74.71	75.36
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	74.71	74.5
Os09t0323000-01	Rice	cytosol	70.4	66.4
HORVU5Hr1G055920.8	Barley	plastid	70.98	66.04
EER98731	Sorghum	plastid	69.25	65.85
TraesCS5D01G188200.1	Wheat	plastid	70.69	65.6
TraesCS5B01G181300.1	Wheat	plastid	70.69	65.6
TraesCS5A01G183100.1	Wheat	plastid	70.69	65.6
Zm00001d005598_P001	Maize	plastid	67.82	64.66
Solyc08g080570.2.1	Tomato	cytosol	63.51	62.96
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	76.44	62.74
Zm00001d020093_P002	Maize	golgi	54.02	62.25
Os08t0374800-01	Rice	golgi	70.98	60.54
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	75.29	60.51
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	72.41	59.57
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	72.41	59.57
GSMUA_Achr9P06140_001	Banana	plastid	75.86	50.67
GSMUA_Achr6P26620_001	Banana	plastid	76.44	49.53
Solyc07g043550.2.1	Tomato	cytosol, unclear	37.64	43.38
Solyc12g006410.1.1	Tomato	unclear	43.1	37.59
Solyc02g030230.2.1	Tomato	mitochondrion	44.25	37.02
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	42.82	35.73
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	27.59	22.17
Solyc07g006220.1.1	Tomato	nucleus	26.72	21.88
Solyc03g083550.1.1	Tomato	golgi	25.29	21.67
Solyc09g092330.1.1	Tomato	nucleus	27.87	21.46
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	26.15	21.06
Solyc08g079440.1.1	Tomato	nucleus	26.72	20.9
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	25.86	20.69
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	25.29	20.23
Solyc01g091200.2.1	Tomato	nucleus	25.0	20.0
Solyc08g069110.2.1	Tomato	unclear	26.15	13.98
Solyc07g062130.2.1	Tomato	extracellular, unclear	25.57	13.2
Solyc10g007480.2.1	Tomato	nucleus	19.83	11.69
Solyc08g080140.2.1	Tomato	extracellular	4.02	4.65

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	UniProt:K4DFS4	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725
PANTHER:PTHR43725:SF11	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc12g055930.1	EnsemblPlants:Solyc12g055930.1.1	TIGRFAMs:TIGR01179	InterPro:UDP_G4E
UniParc:UPI0002769D24	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:61919786..61923383

Molecular Weight (calculated)

38235.6 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.236

Length

348 amino acids

Sequence
(BLAST)

001: MSKNILVTGG AGYIGSHTVL QLLLGGYKTV VVDNLDNSSA IAIKRVQELA GRFGSNLLFY NIDLRDKPAV EKLFESNKFD AVIHFAGLKA VGESVQKPLM
101: YYNNNITGTI TLLEVMATRG CKNLVFSSSS TVYGWPKEVP CTEESPISAA NPYGRTKLFA EDICRDVYHS DSQWKVILLR YFNPIGAHPS GCIGDDPRGI
201: PNNLMPFVQQ VAVGRRPALT VYGTDYPTKD GTAVRDYIHV VDLADGHIAA LRKLFDPSTG CEVYNLGTGK GSSVLEVVAA FEKASGKKIP LVMSGRRPGD
301: AEIVYAATEK AERELNWRAK YGIEDMCRDQ WNWASKNPYG YEGSKESK

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.