Factsheet for Solyc07g062130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

plastid 3
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	96.14	96.14
Solyc10g007480.2.1	Tomato	nucleus	78.04	89.15
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	87.69	87.56
KRH13001	Soybean	cytosol, mitochondrion, plastid	86.65	87.43
KRH43408	Soybean	nucleus	86.65	87.43
KRH21867	Soybean	cytosol, mitochondrion, plastid	86.35	87.0
KRH27429	Soybean	cytosol, mitochondrion, plastid	86.2	86.85
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	83.23	84.11
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	83.09	83.96
Solyc08g080140.2.1	Tomato	extracellular	36.05	80.73
KXG21627	Sorghum	mitochondrion	80.86	79.45
Zm00001d037784_P002	Maize	endoplasmic reticulum	81.6	79.02
HORVU5Hr1G007050.2	Barley	plastid	83.09	77.24
Solyc08g069110.2.1	Tomato	unclear	73.89	76.5
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	73.44	75.0
KRH46062	Soybean	cytosol	66.32	73.04
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	13.2	25.57
Solyc08g082440.2.1	Tomato	cytosol, golgi	12.61	24.22
Solyc07g043550.2.1	Tomato	cytosol, unclear	10.39	23.18
Solyc08g080570.2.1	Tomato	cytosol	11.87	22.79
Solyc03g083550.1.1	Tomato	golgi	13.2	21.92
Solyc08g079440.1.1	Tomato	nucleus	14.24	21.57
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	13.65	21.15
Solyc07g006220.1.1	Tomato	nucleus	13.06	20.71
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	13.35	20.69
Solyc01g091200.2.1	Tomato	nucleus	13.35	20.69
Solyc09g092330.1.1	Tomato	nucleus	13.8	20.58
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	13.2	20.55
Solyc12g006410.1.1	Tomato	unclear	12.17	20.55
Solyc02g030230.2.1	Tomato	mitochondrion	12.61	20.43
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	12.76	19.91
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	12.17	19.66

Protein Annotations

KEGG:00521+4.2.1.46	KEGG:00523+4.2.1.46	KEGG:00525+4.2.1.46	MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008460
GO:GO:0009225	GO:GO:0009987	UniProt:K4CGP6	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321
PFAM:PF16363	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	InterPro:RmlD-like-bd	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc07g062130.2
EnsemblPlants:Solyc07g062130.2.1	TIGRFAMs:TIGR01181	UniParc:UPI000276B480	InterPro:dTDP_Gluc_deHydtase	:	:

Description

Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 [Source:Projected from Arabidopsis thaliana (AT3G14790) UniProtKB/Swiss-Prot;Acc:Q9LH76]

Coordinates

chr7:+:64937350..64939732

Molecular Weight (calculated)

75594.0 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.393

Length

674 amino acids

Sequence
(BLAST)

001: MSNYTPKNIL ITGAAGFIAS HVANRLVRSY PDYNIVVLDK LDYCSNLKNL SPSRSSPNFK FVKGDIGSAD LVNYLLITEN IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYARSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLALNG KPLPIHGDGS NVRSYLYCED VAEAFEVVLH RGDVGHVYNI GTKKERRVID VAKDISNLFN KDPDTSIQFV ENRPFNDQRY FLDDQKLKNL
301: GWSEKTTWEE GLKKTMEWYV NNPDWWGDVS GALLPHPRML MMPGGVERNS DGAEKDDSGS SEISGNMKLN GMVVPASKIS NSPSRSPYKF LIYGRTGWIG
401: GLLSKLCEKQ GIPYEYGKGR LEDRSQLLSD IHAVKPTHVF NAAGVTGRPN VDWCESHKTE TIRTNVAGTL NLADVCKENG LLMMNFATGC IFEYDAAHPE
501: GSGIGFKEED TPNFTGSFYS KTKAMVEELL KEYPNVCTLR VRMPISSDLN NPRNFITKIS RYNKVVNIPN SMTILDELLP ISIEMAKRNL TGIWNFTNPG
601: VVSHNEILEM YKKYINPEFK WSNFTLEEQA KVIVAPRSNN EMDASKLKKE FPELLSIKES LIKNVFEPNR KTSA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.