Factsheet for Solyc10g007480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	98.81	86.5
GSMUA_Achr4P02550_001	Banana	mitochondrion	62.54	80.92
Solyc08g080140.2.1	Tomato	extracellular	40.34	79.07
Solyc07g062130.2.1	Tomato	extracellular, unclear	89.15	78.04
Solyc08g069110.2.1	Tomato	unclear	73.39	66.51
CDX81794	Canola	plastid	37.46	63.69
Solyc07g043550.2.1	Tomato	cytosol, unclear	10.68	20.86
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	11.69	19.83
Solyc08g082440.2.1	Tomato	cytosol, golgi	11.69	19.66
Solyc08g080570.2.1	Tomato	cytosol	10.68	17.95
Solyc08g079440.1.1	Tomato	nucleus	12.88	17.08
Solyc03g083550.1.1	Tomato	golgi	11.36	16.5
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	11.86	16.09
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	11.86	16.09
Solyc09g092330.1.1	Tomato	nucleus	12.03	15.71
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	11.36	15.51
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	11.36	15.47
Solyc01g091200.2.1	Tomato	nucleus	11.36	15.4
Solyc07g006220.1.1	Tomato	nucleus	11.02	15.29
Solyc12g006410.1.1	Tomato	unclear	10.0	14.79
Solyc02g030230.2.1	Tomato	mitochondrion	10.34	14.66
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	10.0	14.15

Protein Annotations

EnsemblPlants:Solyc10g007480.2.1	EnsemblPlantsGene:Solyc10g007480.2	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	SUPFAM:SSF51735
UniParc:UPI000276B3B3	UniProt:K4CXS7	MapMan:3.13.6.1	:	:	:

Description

No Description!

Coordinates

chr10:-:1823864..1827007

Molecular Weight (calculated)

66343.9 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.428

Length

590 amino acids

Sequence
(BLAST)

001: MHFAAQTHVD NSFGNSFEFT KNNIYGTHVL LEACKVTGQI RRFIHVSTDE VYGETDEDAV VGNHEASQLL PTNPYSATKA GAEMLVMAYG RSYGLPVITT
101: RGNNVYGPNQ FPEKLIPKFI LLAMRGKPLP IHGDGCNVRS YLYCEDVAEA FECVLHKGEV GHVYNIGTTK ERRVIDVAQD ICKLFDIDSD KVIQFVENRP
201: FNDQRYFLDD QKLKNLGWSE TTRWEEGLKK TIEWYKNNPD WWGDVSGALL PHPRMLMMPG DIERNLDGAE KYDSGSTEFS GKSNETKTAA PASKTSNVPQ
301: KSPFKFLIYG RTGWIGGVLG KLCEKQGIPY EYGKGRLEDR SKLLADINSV KPTHVFNAAG VTGRPNVDWC ESHKPETIRT NVAGTLNLAD VCRENGLLMV
401: NFATGCIFEY DAAHPEGSGI GFKEEDTPNF AGSFYSKTKA MVEDLLKNYD NVCTLRVRMP ISSDLSNPRN FITKISRYNK VVNIPNSMTI LDELLPISIE
501: MAKRNLRGIW NFTNPGVVSH NEILEMYKKY IDPAFTYANF TVEEQAKVIV AARSNNEMDA SKLKKEFPEL LSIKESLIKY VFEPNKKTSA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.