Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- golgi 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058533 | Potato | cytosol | 95.68 | 95.68 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 86.71 | 86.42 |
| CDY45969 | Canola | cytosol | 82.06 | 83.17 |
| Bra027005.1-P | Field mustard | cytosol | 81.73 | 82.83 |
| CDY45471 | Canola | cytosol | 81.73 | 82.83 |
| AT1G63000.1 | Thale cress | cytosol | 82.06 | 82.06 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 81.4 | 81.67 |
| TraesCS6B01G267600.1 | Wheat | peroxisome | 81.06 | 81.33 |
| TraesCS6A01G257500.1 | Wheat | peroxisome | 81.06 | 81.33 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 73.42 | 79.5 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 80.07 | 78.76 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 79.73 | 78.18 |
| Os02t0678400-01 | Rice | plasma membrane | 80.07 | 77.49 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 78.74 | 77.45 |
| Bra019776.1-P | Field mustard | cytosol | 81.4 | 76.32 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 77.74 | 76.22 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 80.73 | 76.18 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 81.06 | 75.54 |
| CDX98052 | Canola | cytosol | 79.07 | 73.68 |
| Solyc10g007480.2.1 | Tomato | nucleus | 79.07 | 40.34 |
| Solyc07g062130.2.1 | Tomato | extracellular, unclear | 80.73 | 36.05 |
| Solyc08g069110.2.1 | Tomato | unclear | 76.08 | 35.18 |
| Solyc07g043550.2.1 | Tomato | cytosol, unclear | 4.98 | 4.97 |
| Solyc08g082440.2.1 | Tomato | cytosol, golgi | 5.65 | 4.84 |
| Solyc12g055930.1.1 | Tomato | cytosol, extracellular, golgi | 4.65 | 4.02 |
| Solyc08g080570.2.1 | Tomato | cytosol | 4.32 | 3.7 |
| Solyc12g006410.1.1 | Tomato | unclear | 4.65 | 3.51 |
| Solyc10g018260.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 4.98 | 3.45 |
| Solyc08g079440.1.1 | Tomato | nucleus | 4.98 | 3.37 |
| Solyc09g092330.1.1 | Tomato | nucleus | 4.98 | 3.32 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 4.65 | 3.23 |
| Solyc05g050990.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion | 4.65 | 3.22 |
| Solyc02g030230.2.1 | Tomato | mitochondrion | 4.32 | 3.12 |
| Solyc07g006220.1.1 | Tomato | nucleus | 4.32 | 3.06 |
| Solyc12g010540.1.1 | Tomato | endoplasmic reticulum | 4.32 | 3.01 |
| Solyc03g083550.1.1 | Tomato | golgi | 3.99 | 2.96 |
| Solyc02g069580.2.1 | Tomato | golgi, mitochondrion | 3.99 | 2.88 |
| Solyc01g091200.2.1 | Tomato | nucleus | 3.99 | 2.76 |
Protein Annotations
| EnsemblPlants:Solyc08g080140.2.1 | EnsemblPlantsGene:Solyc08g080140.2 | Gene3D:3.40.50.720 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0055114 |
| InterPro:NAD(P)-bd_dom_sf | InterPro:RmlD-like-bd | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF405 | PFAM:PF04321 | SUPFAM:SSF51735 |
| UniParc:UPI000276B701 | UniProt:K4CP14 | MapMan:3.13.6.1 | : | : | : |
Description
Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:Projected from Arabidopsis thaliana (AT1G63000) UniProtKB/Swiss-Prot;Acc:Q9LQ04]
Coordinates
chr8:+:63478754..63480888
Molecular Weight (calculated)
33810.4 Da
IEP (calculated)
6.162
GRAVY (calculated)
-0.319
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFPANGSSQ EKPYKFLIYG RTGWIGGLLG KLCEAQGIEY EYGSGRLENR SSLESDLATV NPTHVFNAAG VTGRPNVDWC ESHKVETIRA NVVGTLTLAD
101: VCREKGLILI NYATGCIFEY DSGHKLGSGI GFKEEDTPNF IGSFYSKTKA MVEELLKNYD NVCTLRVRMP ISADLTNPRN FITKITRYAR VVNIPNSMTI
201: LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPSFKWNNF TIEEQSEVII APRSNNELDA SKLSKEFPEM KSIKESLIEN VFKPNRKTPV
301: A
101: VCREKGLILI NYATGCIFEY DSGHKLGSGI GFKEEDTPNF IGSFYSKTKA MVEELLKNYD NVCTLRVRMP ISADLTNPRN FITKITRYAR VVNIPNSMTI
201: LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPSFKWNNF TIEEQSEVII APRSNNELDA SKLSKEFPEM KSIKESLIEN VFKPNRKTPV
301: A
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
Arabidopsis Description
NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.