Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027005.1-P | Field mustard | cytosol | 98.99 | 98.99 |
| CDY45969 | Canola | cytosol | 98.99 | 98.99 |
| AT1G63000.1 | Thale cress | cytosol | 95.62 | 94.35 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 85.86 | 84.44 |
| PGSC0003DMT400058533 | Potato | cytosol | 85.52 | 84.39 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 91.25 | 83.9 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 83.5 | 82.67 |
| TraesCS6A01G257500.1 | Wheat | peroxisome | 83.17 | 82.33 |
| CDX98052 | Canola | cytosol | 89.23 | 82.04 |
| TraesCS6B01G267600.1 | Wheat | peroxisome | 82.83 | 82.0 |
| Solyc08g080140.2.1 | Tomato | extracellular | 82.83 | 81.73 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 75.42 | 80.58 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 82.49 | 79.8 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 81.14 | 78.76 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 80.47 | 78.1 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 80.47 | 77.85 |
| Os02t0678400-01 | Rice | plasma membrane | 81.14 | 77.49 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 82.49 | 76.8 |
| CDY72469 | Canola | cytosol | 30.98 | 69.7 |
| CDY71423 | Canola | cytosol, nucleus | 80.13 | 55.22 |
| CDY32340 | Canola | cytosol, mitochondrion, peroxisome | 79.12 | 36.55 |
| CDX98494 | Canola | cytosol, mitochondrion, plastid | 78.45 | 36.07 |
| CDX97601 | Canola | cytosol, mitochondrion, plastid | 78.45 | 36.07 |
| CDY20084 | Canola | cytosol, mitochondrion, peroxisome | 78.11 | 36.02 |
| CDY35137 | Canola | cytosol, mitochondrion, plastid | 80.13 | 35.52 |
| CDY40003 | Canola | cytosol, mitochondrion, plastid | 79.46 | 35.22 |
| CDY45116 | Canola | cytosol, mitochondrion, peroxisome | 78.45 | 35.04 |
| CDY24092 | Canola | cytosol, mitochondrion, peroxisome | 78.11 | 34.89 |
| CDY60210 | Canola | cytosol, mitochondrion, peroxisome | 77.78 | 34.58 |
| CDX88455 | Canola | cytosol, peroxisome, plastid | 80.13 | 33.66 |
| CDX81794 | Canola | plastid | 38.72 | 33.14 |
| CDY25850 | Canola | cytosol, mitochondrion, peroxisome | 12.46 | 8.64 |
| CDY71965 | Canola | cytosol, mitochondrion | 4.38 | 5.46 |
| CDY49495 | Canola | cytosol | 1.35 | 4.08 |
| CDY50431 | Canola | cytosol | 4.71 | 4.02 |
| CDY31278 | Canola | cytosol | 4.71 | 3.99 |
| CDY21065 | Canola | cytosol | 4.71 | 3.99 |
| CDY49193 | Canola | cytosol | 4.71 | 3.99 |
| CDY47346 | Canola | cytosol | 4.71 | 3.99 |
| CDY69000 | Canola | cytosol | 4.38 | 3.88 |
| CDY47846 | Canola | golgi | 4.38 | 3.79 |
| CDX77481 | Canola | endoplasmic reticulum | 5.72 | 3.75 |
| CDY03506 | Canola | cytosol, golgi | 4.38 | 3.74 |
| CDY47611 | Canola | golgi | 4.38 | 3.74 |
| CDX85133 | Canola | endoplasmic reticulum | 5.72 | 3.73 |
| CDY53207 | Canola | endoplasmic reticulum | 5.39 | 3.52 |
| CDX92990 | Canola | endoplasmic reticulum | 5.39 | 3.51 |
| CDY08378 | Canola | golgi | 4.04 | 3.48 |
| CDY40862 | Canola | cytosol, golgi | 4.04 | 3.46 |
| CDX86828 | Canola | golgi | 4.04 | 3.46 |
| CDX95646 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 5.05 | 3.45 |
| CDY67756 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 5.05 | 3.45 |
| CDY04398 | Canola | cytosol, endoplasmic reticulum, golgi | 4.71 | 3.26 |
| CDX97356 | Canola | cytosol, endoplasmic reticulum, golgi | 4.71 | 3.26 |
| CDX86716 | Canola | cytosol, endoplasmic reticulum, peroxisome | 4.71 | 3.23 |
| CDX94504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 4.71 | 3.22 |
| CDX78998 | Canola | mitochondrion | 4.38 | 3.16 |
| CDY64583 | Canola | endoplasmic reticulum | 4.71 | 3.04 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 4.71 | 3.04 |
| CDX72242 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 4.38 | 3.02 |
| CDY63064 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 4.38 | 3.02 |
| CDY39205 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 4.38 | 3.02 |
| CDX82768 | Canola | mitochondrion | 4.04 | 2.92 |
| CDY70926 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 4.04 | 2.8 |
| CDY28188 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 4.04 | 2.8 |
| CDY13102 | Canola | golgi | 3.7 | 2.67 |
| CDY49498 | Canola | golgi | 3.7 | 2.67 |
| CDY49015 | Canola | golgi | 3.7 | 2.67 |
| CDY52524 | Canola | golgi | 3.7 | 2.59 |
| CDY31644 | Canola | golgi | 3.7 | 2.59 |
| CDY29113 | Canola | golgi | 3.37 | 2.43 |
| CDY09555 | Canola | mitochondrion | 3.37 | 2.38 |
| CDY02312 | Canola | mitochondrion | 3.37 | 2.38 |
| CDY60264 | Canola | plastid | 4.71 | 2.29 |
Protein Annotations
| EnsemblPlants:CDY45471 | EnsemblPlantsGene:GSBRNA2T00082099001 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:RmlD-like-bd | PANTHER:PTHR10366 |
| PANTHER:PTHR10366:SF405 | PFAM:PF04321 | ProteinID:CDY45471 | ProteinID:CDY45471.1 | SUPFAM:SSF51735 | UniParc:UPI0004EC1BF3 |
| UniProt:A0A078I6F8 | MapMan:3.13.6.1 | : | : | : | : |
Description
BnaC09g12890DBnaC09g12890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6F8]
Coordinates
chrLK032626:-:73798..75627
Molecular Weight (calculated)
33222.8 Da
IEP (calculated)
5.788
GRAVY (calculated)
-0.245
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAEANASFN FLIYGRTGWI GGLLGKLCEA QGISYTYGSG RLQDRQSIVD DIETVKPSHV FNAAGVTGRP NVDWCESHKV ETIRTNVAGT LTLADICREK
101: GLVLINYATG CIFEYDSGHP LGSGVGFKEE DTPNFTGSFY SKTKAMVEEL LKNYENVCTL RVRMPISSDL SNPRNFITKI ARYEKVVDIP NSMTILDELL
201: PISIEMAKRN LTGIYNFTNP GVVSHNEILE MYREYIDPSF TWKNFTLEEQ AKVIVAPRSN NELDATKLKT EFPEMLSIKE SLIKFVFEPN KKTGVKA
101: GLVLINYATG CIFEYDSGHP LGSGVGFKEE DTPNFTGSFY SKTKAMVEEL LKNYENVCTL RVRMPISSDL SNPRNFITKI ARYEKVVDIP NSMTILDELL
201: PISIEMAKRN LTGIYNFTNP GVVSHNEILE MYREYIDPSF TWKNFTLEEQ AKVIVAPRSN NELDATKLKT EFPEMLSIKE SLIKFVFEPN KKTGVKA
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
Arabidopsis Description
NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.