Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92990 | Canola | endoplasmic reticulum | 99.56 | 99.34 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 99.12 | 98.9 |
| CDX77481 | Canola | endoplasmic reticulum | 94.73 | 95.14 |
| CDX85133 | Canola | endoplasmic reticulum | 94.73 | 94.52 |
| CDY64583 | Canola | endoplasmic reticulum | 95.16 | 94.13 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 95.16 | 94.13 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 94.73 | 93.7 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 78.02 | 78.71 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 69.89 | 76.44 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 74.73 | 75.89 |
| KRH31569 | Soybean | mitochondrion | 76.92 | 75.76 |
| KRG97348 | Soybean | endoplasmic reticulum | 72.75 | 75.4 |
| Solyc09g092330.1.1 | Tomato | nucleus | 74.51 | 75.0 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 72.97 | 73.13 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 68.13 | 71.43 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 66.37 | 69.75 |
| CDY67756 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 64.62 | 67.59 |
| CDX95646 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 64.4 | 67.36 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 64.84 | 66.59 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 64.84 | 66.59 |
| CDY63064 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 62.64 | 66.28 |
| CDY04398 | Canola | cytosol, endoplasmic reticulum, golgi | 61.76 | 65.5 |
| CDX97356 | Canola | cytosol, endoplasmic reticulum, golgi | 61.76 | 65.5 |
| CDX86716 | Canola | cytosol, endoplasmic reticulum, peroxisome | 62.2 | 65.21 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 63.52 | 65.09 |
| CDX94504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 62.2 | 65.06 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 69.67 | 64.3 |
| CDY70926 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 59.56 | 63.17 |
| CDY28188 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 59.56 | 63.17 |
| CDX72242 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 59.34 | 62.79 |
| CDY39205 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 59.12 | 62.56 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 65.49 | 61.44 |
| Zm00001d049804_P001 | Maize | plasma membrane | 59.34 | 60.27 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 61.54 | 58.58 |
| Os08t0526100-01 | Rice | plastid | 61.32 | 58.37 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 61.1 | 58.04 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 61.32 | 58.0 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 61.98 | 57.91 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 62.64 | 57.69 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 60.88 | 57.47 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 62.86 | 57.43 |
| TraesCS7B01G153900.1 | Wheat | plastid | 61.98 | 57.32 |
| TraesCS7D01G257800.1 | Wheat | plastid | 61.54 | 57.14 |
| TraesCS7A01G256600.1 | Wheat | plastid | 61.54 | 57.14 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 56.26 | 56.89 |
| HORVU7Hr1G053260.2 | Barley | plastid | 61.1 | 56.73 |
| HORVU5Hr1G075660.1 | Barley | plastid | 61.32 | 54.92 |
| CDY47611 | Canola | golgi | 21.1 | 27.59 |
| CDY03506 | Canola | cytosol, golgi | 20.88 | 27.3 |
| CDX86828 | Canola | golgi | 20.66 | 27.09 |
| CDY40862 | Canola | cytosol, golgi | 20.66 | 27.09 |
| CDY47846 | Canola | golgi | 20.22 | 26.82 |
| CDY31278 | Canola | cytosol | 20.66 | 26.78 |
| CDY21065 | Canola | cytosol | 20.66 | 26.78 |
| CDY08378 | Canola | golgi | 20.0 | 26.38 |
| CDY49193 | Canola | cytosol | 20.22 | 26.21 |
| CDY47346 | Canola | cytosol | 20.22 | 26.21 |
| CDY50431 | Canola | cytosol | 20.0 | 26.15 |
| CDY69000 | Canola | cytosol | 19.12 | 25.97 |
| CDY09555 | Canola | mitochondrion | 21.1 | 22.86 |
| CDY02312 | Canola | mitochondrion | 20.66 | 22.38 |
| CDY13102 | Canola | golgi | 20.22 | 22.33 |
| CDY29113 | Canola | golgi | 20.0 | 22.09 |
| CDY49498 | Canola | golgi | 20.0 | 22.09 |
| CDX82768 | Canola | mitochondrion | 19.78 | 21.9 |
| CDX78998 | Canola | mitochondrion | 19.78 | 21.9 |
| CDY49015 | Canola | golgi | 19.78 | 21.84 |
| CDY52524 | Canola | golgi | 19.34 | 20.75 |
| CDY31644 | Canola | golgi | 19.34 | 20.75 |
| CDY71965 | Canola | cytosol, mitochondrion | 10.33 | 19.75 |
| CDY25850 | Canola | cytosol, mitochondrion, peroxisome | 18.24 | 19.39 |
| CDY60264 | Canola | plastid | 21.32 | 15.88 |
| CDY60210 | Canola | cytosol, mitochondrion, peroxisome | 20.44 | 13.92 |
| CDY32340 | Canola | cytosol, mitochondrion, peroxisome | 19.56 | 13.84 |
| CDY45116 | Canola | cytosol, mitochondrion, peroxisome | 20.22 | 13.83 |
| CDY24092 | Canola | cytosol, mitochondrion, peroxisome | 20.22 | 13.83 |
| CDY20084 | Canola | cytosol, mitochondrion, peroxisome | 19.34 | 13.66 |
| CDX97601 | Canola | cytosol, mitochondrion, plastid | 19.34 | 13.62 |
| CDX98494 | Canola | cytosol, mitochondrion, plastid | 19.34 | 13.62 |
| CDY35137 | Canola | cytosol, mitochondrion, plastid | 19.78 | 13.43 |
| CDY40003 | Canola | cytosol, mitochondrion, plastid | 19.78 | 13.43 |
| CDY49495 | Canola | cytosol | 2.86 | 13.27 |
| CDX88455 | Canola | cytosol, peroxisome, plastid | 20.44 | 13.15 |
| CDX81794 | Canola | plastid | 5.49 | 7.2 |
| CDY72469 | Canola | cytosol | 1.98 | 6.82 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 4.62 | 6.5 |
| CDY71423 | Canola | cytosol, nucleus | 5.93 | 6.26 |
| CDY45471 | Canola | cytosol | 3.52 | 5.39 |
| CDY45969 | Canola | cytosol | 3.52 | 5.39 |
| CDX98052 | Canola | cytosol | 3.74 | 5.26 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:A0A078IT82 | UniProt:A0A078IT82 | EnsemblPlants:CDY53207 |
| ProteinID:CDY53207 | ProteinID:CDY53207.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | EnsemblPlantsGene:GSBRNA2T00010207001 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF16363 | PRINTS:PR01713 | PANTHER:PTHR43574 |
| PANTHER:PTHR43574:SF19 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0004EEE3B1 | SEG:seg | : |
Description
BnaC03g74010DBnaC03g74010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT82]
Coordinates
chrLK033175:-:6049..8152
Molecular Weight (calculated)
50406.1 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.280
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALFLL LLFAFNYHPL SDSRAAASHH LHRRSFLSTG IFSSSSSSSA WEKRVRQSST
101: AKRQHGLSVL VTGAAGFVGS HCSIALRKRG DGVLGFDNFN DYYDTSLKRA RQNLLEKQQV FIVEGDLNDG PLLRKLFDIV PFTHVLHLAA QAGVRYAMKN
201: PQSYISSNIA GLVNLLEVAK AANPQPAIVW ASSSSVYGLN TENPFSEEHR TDQPASLYAA TKKAGEEIAH TYNHIYGLSL TGLRFFTVYG PWGRPDMAYF
301: FFTKAILHGK SIDIYRTQDN QEVARDFTYI DDIVKGCVGA LDTAEKSTGS GRKKRGPAQL RVYNLGNTSP VPVGRLVSIL EGLLGTKAKK HLIKMPRNGD
401: VPYTHANVSL AYRDFGYKPT TDLATGLRKF VKWYVGYYGI QPRVKKENSH ADDSA
101: AKRQHGLSVL VTGAAGFVGS HCSIALRKRG DGVLGFDNFN DYYDTSLKRA RQNLLEKQQV FIVEGDLNDG PLLRKLFDIV PFTHVLHLAA QAGVRYAMKN
201: PQSYISSNIA GLVNLLEVAK AANPQPAIVW ASSSSVYGLN TENPFSEEHR TDQPASLYAA TKKAGEEIAH TYNHIYGLSL TGLRFFTVYG PWGRPDMAYF
301: FFTKAILHGK SIDIYRTQDN QEVARDFTYI DDIVKGCVGA LDTAEKSTGS GRKKRGPAQL RVYNLGNTSP VPVGRLVSIL EGLLGTKAKK HLIKMPRNGD
401: VPYTHANVSL AYRDFGYKPT TDLATGLRKF VKWYVGYYGI QPRVKKENSH ADDSA
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.