Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- extracellular 2
- golgi 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G23820.1 | KRG91803 | AT4G09570.1 | 19130088 |
AT3G23820.1 | KRH34983 | AT4G09570.1 | 19130088 |
AT3G23820.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG97348 | Soybean | endoplasmic reticulum | 83.55 | 87.93 |
VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 80.09 | 82.04 |
KRH58854 | Soybean | endoplasmic reticulum, golgi | 71.64 | 79.57 |
PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 76.62 | 79.02 |
Solyc09g092330.1.1 | Tomato | nucleus | 76.84 | 78.54 |
AT3G23820.1 | Thale cress | endoplasmic reticulum | 77.06 | 77.39 |
CDX77481 | Canola | endoplasmic reticulum | 75.76 | 77.26 |
Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 76.19 | 77.19 |
Bra014987.1-P | Field mustard | endoplasmic reticulum | 75.76 | 77.09 |
CDX92990 | Canola | endoplasmic reticulum | 75.97 | 76.97 |
CDY53207 | Canola | endoplasmic reticulum | 75.76 | 76.92 |
CDX85133 | Canola | endoplasmic reticulum | 75.76 | 76.75 |
CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 76.19 | 76.52 |
Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 76.19 | 76.52 |
PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 75.11 | 76.43 |
CDY64583 | Canola | endoplasmic reticulum | 75.97 | 76.3 |
PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 68.83 | 73.27 |
Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 67.53 | 72.06 |
GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 66.88 | 69.75 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 65.58 | 68.4 |
GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 64.94 | 67.57 |
KRH42756 | Soybean | extracellular, golgi, plastid | 72.08 | 67.55 |
KRH04016 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 61.9 | 66.51 |
KRH57292 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 61.47 | 66.2 |
KRH76209 | Soybean | endoplasmic reticulum, plastid | 61.04 | 64.38 |
KRH65316 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 61.04 | 64.38 |
KRH72376 | Soybean | endoplasmic reticulum, mitochondrion | 59.74 | 64.04 |
KRH02967 | Soybean | nucleus | 59.52 | 63.81 |
GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 66.23 | 63.09 |
KRH40009 | Soybean | plastid | 54.55 | 61.92 |
Zm00001d049804_P001 | Maize | plasma membrane | 58.01 | 59.82 |
Zm00001d021026_P001 | Maize | endoplasmic reticulum | 62.34 | 59.14 |
Os08t0526100-01 | Rice | plastid | 61.04 | 59.0 |
TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 61.04 | 59.0 |
EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 62.77 | 58.7 |
EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 60.39 | 58.25 |
Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 56.71 | 58.22 |
TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 60.61 | 58.21 |
TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 60.61 | 58.09 |
TraesCS7A01G256600.1 | Wheat | plastid | 61.26 | 57.76 |
Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 62.12 | 57.63 |
TraesCS7B01G153900.1 | Wheat | plastid | 61.26 | 57.52 |
TraesCS7D01G257800.1 | Wheat | plastid | 60.82 | 57.35 |
HORVU7Hr1G053260.2 | Barley | plastid | 60.61 | 57.14 |
HORVU5Hr1G075660.1 | Barley | plastid | 61.47 | 55.91 |
KRH51264 | Soybean | plastid | 20.35 | 26.78 |
KRH41129 | Soybean | nucleus | 19.7 | 26.0 |
KRH41316 | Soybean | extracellular, golgi | 19.48 | 25.71 |
KRH59827 | Soybean | extracellular, golgi | 19.48 | 25.71 |
KRH60045 | Soybean | extracellular | 19.26 | 25.43 |
KRH27832 | Soybean | plastid | 19.26 | 22.94 |
KRH77652 | Soybean | plastid | 19.26 | 22.76 |
KRH43065 | Soybean | golgi, mitochondrion, plastid | 19.91 | 22.12 |
KRH11871 | Soybean | golgi, plastid | 19.7 | 21.93 |
KRH36892 | Soybean | golgi, mitochondrion | 19.48 | 21.69 |
KRH59194 | Soybean | golgi, mitochondrion | 19.05 | 21.15 |
KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 2.38 | 15.94 |
KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 2.38 | 15.94 |
KRH26241 | Soybean | cytosol | 1.73 | 15.09 |
KRH13001 | Soybean | cytosol, mitochondrion, plastid | 19.48 | 13.47 |
KRH43408 | Soybean | nucleus | 19.48 | 13.47 |
KRH21867 | Soybean | cytosol, mitochondrion, plastid | 19.26 | 13.3 |
KRH27429 | Soybean | cytosol, mitochondrion, plastid | 19.26 | 13.3 |
KRH46062 | Soybean | cytosol | 17.53 | 13.24 |
KRG98907 | Soybean | cytosol, mitochondrion, peroxisome | 18.83 | 13.18 |
KRH04933 | Soybean | cytosol, mitochondrion, plastid | 17.53 | 12.58 |
KRH16155 | Soybean | cytosol | 17.32 | 12.21 |
KRH57264 | Soybean | endoplasmic reticulum | 2.38 | 5.26 |
KRH77471 | Soybean | cytosol, endoplasmic reticulum | 2.6 | 4.32 |
KRH03995 | Soybean | plastid | 2.81 | 4.3 |
KRH57441 | Soybean | cytosol | 2.6 | 3.86 |
Protein Annotations
EntrezGene:100786653 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EMBL:ACUP02007146 | InterPro:Epimerase_deHydtase |
EnsemblPlantsGene:GLYMA_11G254900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 |
UniProt:I1LN28 | EnsemblPlants:KRH31569 | ProteinID:KRH31569 | ProteinID:KRH31569.1 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim |
PFAM:PF01370 | PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF19 | SUPFAM:SSF51735 | TMHMM:TMhelix |
UniParc:UPI000233D6EC | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:34519145..34521614
Molecular Weight (calculated)
51331.6 Da
IEP (calculated)
10.050
GRAVY (calculated)
-0.199
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVFPLGLKL KTIIMGSSSP PDTSKSIKLE RYNSYIRRLN STKLLNASSK LLFRATILVA LILVFLFTFN YPPLAPDFTS HRHLHSHSHF LSSSSSFASW
101: EKQVRHSSTP RRPNGLTVLV TGAAGFVGSH CSLALKKRGD GVLGLDNFNS YYDPSLKRSR QAMLWKHQVF IVEGDLNDTP LLEKLFDVVP FTHILHLAAQ
201: AGVRYAMQNP QSYVTANIAG FVNLLEAAKS ANPQPAIVWA SSSSVYGLNT QNPFSELHRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP
301: WGRPDMAYFF FTKDILQGKT IDVYQTQEGK QVARDFTYID DIVKGCLGAL DTAQKSTGSG GKKKGPAQLR VYNLGNTSPV PVGTLVSILE GLLSTKAKKH
401: VIKMPSNGDV PFTHANVSLA YRDFSYNPTT DLATGLRKFV KWYLGYYGLQ QRLKKEYHLD NE
101: EKQVRHSSTP RRPNGLTVLV TGAAGFVGSH CSLALKKRGD GVLGLDNFNS YYDPSLKRSR QAMLWKHQVF IVEGDLNDTP LLEKLFDVVP FTHILHLAAQ
201: AGVRYAMQNP QSYVTANIAG FVNLLEAAKS ANPQPAIVWA SSSSVYGLNT QNPFSELHRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP
301: WGRPDMAYFF FTKDILQGKT IDVYQTQEGK QVARDFTYID DIVKGCLGAL DTAQKSTGSG GKKKGPAQLR VYNLGNTSPV PVGTLVSILE GLLSTKAKKH
401: VIKMPSNGDV PFTHANVSLA YRDFSYNPTT DLATGLRKFV KWYLGYYGLQ QRLKKEYHLD NE
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.