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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 2
  • extracellular 2
  • golgi 3
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:golgi
Predotar:mitochondrion
PProwler:secretory
WoLF PSORT:nucleus
YLoc:golgi
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97348 Soybean endoplasmic reticulum 83.55 87.93
VIT_05s0029g00420.t01 Wine grape endoplasmic reticulum 80.09 82.04
KRH58854 Soybean endoplasmic reticulum, golgi 71.64 79.57
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 76.62 79.02
Solyc09g092330.1.1 Tomato nucleus 76.84 78.54
AT3G23820.1 Thale cress endoplasmic reticulum 77.06 77.39
CDX77481 Canola endoplasmic reticulum 75.76 77.26
Bra001923.1-P Field mustard cytosol, endoplasmic reticulum, golgi 76.19 77.19
Bra014987.1-P Field mustard endoplasmic reticulum 75.76 77.09
CDX92990 Canola endoplasmic reticulum 75.97 76.97
CDY53207 Canola endoplasmic reticulum 75.76 76.92
CDX85133 Canola endoplasmic reticulum 75.76 76.75
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 76.19 76.52
Bra028348.1-P Field mustard endoplasmic reticulum, golgi, nucleus 76.19 76.52
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 75.11 76.43
CDY64583 Canola endoplasmic reticulum 75.97 76.3
PGSC0003DMT400040718 Potato cytosol, endoplasmic reticulum, golgi 68.83 73.27
Solyc05g053790.1.1 Tomato cytosol, endoplasmic reticulum, golgi 67.53 72.06
GSMUA_Achr8P00950_001 Banana cytosol, endoplasmic reticulum, golgi 66.88 69.75
GSMUA_AchrUn_... Banana endoplasmic reticulum 65.58 68.4
GSMUA_Achr8P08790_001 Banana endoplasmic reticulum, nucleus, peroxisome 64.94 67.57
KRH42756 Soybean extracellular, golgi, plastid 72.08 67.55
KRH04016 Soybean endoplasmic reticulum, golgi, mitochondrion, plastid 61.9 66.51
KRH57292 Soybean endoplasmic reticulum, golgi, mitochondrion, plastid 61.47 66.2
KRH76209 Soybean endoplasmic reticulum, plastid 61.04 64.38
KRH65316 Soybean cytosol, endoplasmic reticulum, golgi, plastid 61.04 64.38
KRH72376 Soybean endoplasmic reticulum, mitochondrion 59.74 64.04
KRH02967 Soybean nucleus 59.52 63.81
GSMUA_Achr7P02740_001 Banana endoplasmic reticulum 66.23 63.09
KRH40009 Soybean plastid 54.55 61.92
Zm00001d049804_P001 Maize plasma membrane 58.01 59.82
Zm00001d021026_P001 Maize endoplasmic reticulum 62.34 59.14
Os08t0526100-01 Rice plastid 61.04 59.0
TraesCS5B01G280700.1 Wheat endoplasmic reticulum 61.04 59.0
EER99141 Sorghum cytosol, endoplasmic reticulum, golgi, plastid 62.77 58.7
EES14210 Sorghum cytosol, extracellular, golgi, plastid 60.39 58.25
Zm00001d031577_P001 Maize cytosol, endoplasmic reticulum, peroxisome, plastid 56.71 58.22
TraesCS5D01G288700.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 60.61 58.21
TraesCS5A01G281600.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 60.61 58.09
TraesCS7A01G256600.1 Wheat plastid 61.26 57.76
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 62.12 57.63
TraesCS7B01G153900.1 Wheat plastid 61.26 57.52
TraesCS7D01G257800.1 Wheat plastid 60.82 57.35
HORVU7Hr1G053260.2 Barley plastid 60.61 57.14
HORVU5Hr1G075660.1 Barley plastid 61.47 55.91
KRH51264 Soybean plastid 20.35 26.78
KRH41129 Soybean nucleus 19.7 26.0
KRH41316 Soybean extracellular, golgi 19.48 25.71
KRH59827 Soybean extracellular, golgi 19.48 25.71
KRH60045 Soybean extracellular 19.26 25.43
KRH27832 Soybean plastid 19.26 22.94
KRH77652 Soybean plastid 19.26 22.76
KRH43065 Soybean golgi, mitochondrion, plastid 19.91 22.12
KRH11871 Soybean golgi, plastid 19.7 21.93
KRH36892 Soybean golgi, mitochondrion 19.48 21.69
KRH59194 Soybean golgi, mitochondrion 19.05 21.15
KRH00406 Soybean cytosol, mitochondrion, nucleus 2.38 15.94
KRG99450 Soybean cytosol, mitochondrion, nucleus 2.38 15.94
KRH26241 Soybean cytosol 1.73 15.09
KRH13001 Soybean cytosol, mitochondrion, plastid 19.48 13.47
KRH43408 Soybean nucleus 19.48 13.47
KRH21867 Soybean cytosol, mitochondrion, plastid 19.26 13.3
KRH27429 Soybean cytosol, mitochondrion, plastid 19.26 13.3
KRH46062 Soybean cytosol 17.53 13.24
KRG98907 Soybean cytosol, mitochondrion, peroxisome 18.83 13.18
KRH04933 Soybean cytosol, mitochondrion, plastid 17.53 12.58
KRH16155 Soybean cytosol 17.32 12.21
KRH57264 Soybean endoplasmic reticulum 2.38 5.26
KRH77471 Soybean cytosol, endoplasmic reticulum 2.6 4.32
KRH03995 Soybean plastid 2.81 4.3
KRH57441 Soybean cytosol 2.6 3.86
Protein Annotations
EntrezGene:100786653MapMan:3.13.4.1Gene3D:3.40.50.720Gene3D:3.90.25.10EMBL:ACUP02007146InterPro:Epimerase_deHydtase
EnsemblPlantsGene:GLYMA_11G254900GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016857GO:GO:0050662
UniProt:I1LN28EnsemblPlants:KRH31569ProteinID:KRH31569ProteinID:KRH31569.1InterPro:NAD(P)-bd_dom_sfInterPro:Nuc_sugar_epim
PFAM:PF01370PRINTS:PR01713PANTHER:PTHR43574PANTHER:PTHR43574:SF19SUPFAM:SSF51735TMHMM:TMhelix
UniParc:UPI000233D6ECSEG:seg::::
Description
hypothetical protein
Coordinates
chr11:+:34519145..34521614
Molecular Weight (calculated)
51331.6 Da
IEP (calculated)
10.050
GRAVY (calculated)
-0.199
Length
462 amino acids
Sequence
(BLAST)
001: MCVFPLGLKL KTIIMGSSSP PDTSKSIKLE RYNSYIRRLN STKLLNASSK LLFRATILVA LILVFLFTFN YPPLAPDFTS HRHLHSHSHF LSSSSSFASW
101: EKQVRHSSTP RRPNGLTVLV TGAAGFVGSH CSLALKKRGD GVLGLDNFNS YYDPSLKRSR QAMLWKHQVF IVEGDLNDTP LLEKLFDVVP FTHILHLAAQ
201: AGVRYAMQNP QSYVTANIAG FVNLLEAAKS ANPQPAIVWA SSSSVYGLNT QNPFSELHRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP
301: WGRPDMAYFF FTKDILQGKT IDVYQTQEGK QVARDFTYID DIVKGCLGAL DTAQKSTGSG GKKKGPAQLR VYNLGNTSPV PVGTLVSILE GLLSTKAKKH
401: VIKMPSNGDV PFTHANVSLA YRDFSYNPTT DLATGLRKFV KWYLGYYGLQ QRLKKEYHLD NE
Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.