Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 93.84 | 92.51 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 82.55 | 84.1 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 85.42 | 83.53 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 82.55 | 83.4 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 82.34 | 83.37 |
| Zm00001d049804_P001 | Maize | plasma membrane | 76.18 | 82.81 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 75.56 | 81.78 |
| HORVU5Hr1G075660.1 | Barley | plastid | 81.52 | 78.15 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 62.63 | 68.85 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 62.01 | 68.17 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 60.78 | 66.67 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 56.26 | 65.87 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 59.96 | 64.75 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 58.93 | 64.06 |
| CDX77481 | Canola | endoplasmic reticulum | 59.34 | 63.8 |
| Solyc09g092330.1.1 | Tomato | nucleus | 59.14 | 63.72 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 59.34 | 63.66 |
| CDX85133 | Canola | endoplasmic reticulum | 59.34 | 63.38 |
| CDY64583 | Canola | endoplasmic reticulum | 59.75 | 63.26 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 59.75 | 63.26 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 59.55 | 63.04 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 55.85 | 62.67 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 59.14 | 62.61 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 58.32 | 62.56 |
| Zm00001d045078_P001 | Maize | extracellular, golgi | 52.98 | 62.47 |
| KRG97348 | Soybean | endoplasmic reticulum | 56.26 | 62.41 |
| KRH31569 | Soybean | mitochondrion | 59.14 | 62.34 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 58.32 | 62.28 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 61.81 | 62.06 |
| CDX92990 | Canola | endoplasmic reticulum | 58.11 | 62.06 |
| CDY53207 | Canola | endoplasmic reticulum | 57.91 | 61.98 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 54.83 | 61.66 |
| Zm00001d037087_P001 | Maize | endoplasmic reticulum | 54.83 | 60.68 |
| Zm00001d018350_P001 | Maize | plasma membrane | 54.21 | 60.14 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 56.67 | 55.98 |
| Zm00001d028427_P001 | Maize | plastid | 54.0 | 54.91 |
| Zm00001d047915_P001 | Maize | plastid | 53.8 | 54.7 |
| Zm00001d034293_P001 | Maize | plastid | 18.89 | 41.63 |
| Zm00001d037310_P001 | Maize | plastid | 24.23 | 38.82 |
| Zm00001d038116_P001 | Maize | plastid | 22.59 | 33.95 |
| Zm00001d017794_P001 | Maize | plastid | 23.61 | 30.83 |
| Zm00001d005598_P001 | Maize | plastid | 18.69 | 24.93 |
| Zm00001d021249_P003 | Maize | cytosol | 18.48 | 24.79 |
| Zm00001d029151_P002 | Maize | extracellular, golgi | 17.86 | 24.51 |
| Zm00001d032346_P002 | Maize | endoplasmic reticulum, golgi, plastid | 18.48 | 21.28 |
| Zm00001d020093_P002 | Maize | golgi | 13.14 | 21.19 |
| Zm00001d047683_P003 | Maize | mitochondrion | 17.86 | 20.52 |
| Zm00001d028825_P001 | Maize | golgi, mitochondrion | 17.66 | 20.38 |
| Zm00001d026311_P001 | Maize | golgi, mitochondrion, plastid | 18.28 | 17.62 |
| Zm00001d002292_P004 | Maize | endoplasmic reticulum, golgi | 16.02 | 17.14 |
| Zm00001d028654_P002 | Maize | cytosol | 18.89 | 13.69 |
| Zm00001d047796_P003 | Maize | extracellular, nucleus, plasma membrane | 18.89 | 13.69 |
| Zm00001d037784_P002 | Maize | endoplasmic reticulum | 18.28 | 12.79 |
| Zm00001d017999_P002 | Maize | mitochondrion | 7.8 | 12.22 |
| Zm00001d010657_P001 | Maize | golgi, plastid, vacuole | 8.21 | 11.56 |
| Zm00001d014509_P001 | Maize | cytosol | 5.95 | 10.1 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 3.08 | 4.89 |
Protein Annotations
| EntrezGene:100280936 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | UniProt:B6SPN6 | EMBL:EU954701 |
| InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 |
| InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | ProteinID:ONM56164.1 | PFAM:PF01370 | PRINTS:PR01713 | PANTHER:PTHR43574 |
| PANTHER:PTHR43574:SF7 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000182B1CC | EnsemblPlantsGene:Zm00001d021026 | EnsemblPlants:Zm00001d021026_P001 |
| EnsemblPlants:Zm00001d021026_T001 | SEG:seg | : | : | : | : |
Description
Protein capI
Coordinates
chr7:-:140795172..140796635
Molecular Weight (calculated)
51728.6 Da
IEP (calculated)
10.202
GRAVY (calculated)
-0.059
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSGITAVD AAAKGMKLER YASGGALLLR RATSAKLVSA SSHLLFRATV LATLALVFLF TLHYPSLLSR SFHLSAGGGG GADDGARSSA SHRSLLMSSA
101: SYGGAAWEKE VRRSARPSRD GGISVLVTGA AGFVGTHCSL ALRARGDGVL GLDNFNSYYD PSLKRARQAL LASRGVLVLD ADINDAPLLE RLFDVAAFTH
201: VLHLAAQAGV RYAMEAPQTY VASNVAGLVS VLEVAAKHAD PQPAVVWASS SSVYGLNTDA PFSEDHRTDR PASLYAATKK AGEAIAHAYN HIYGLSITGL
301: RFFTVYGPWG RPDMAYFFFA RSIVAGEPVT LFRAADGSDA RRDFTYIDDV VKGCLGALDT AGKSTGSRSG RKSGPAPLRV YNLGNTSPVP VTRMVAILEK
401: LLGRKANKRV VTMPSNGDVP FTHANVSHAA HDFGYRPTTS LEAGLRHFVD WFVSYYKLDA KIAKPAAADD DKPAKKKKKN KAMSASS
101: SYGGAAWEKE VRRSARPSRD GGISVLVTGA AGFVGTHCSL ALRARGDGVL GLDNFNSYYD PSLKRARQAL LASRGVLVLD ADINDAPLLE RLFDVAAFTH
201: VLHLAAQAGV RYAMEAPQTY VASNVAGLVS VLEVAAKHAD PQPAVVWASS SSVYGLNTDA PFSEDHRTDR PASLYAATKK AGEAIAHAYN HIYGLSITGL
301: RFFTVYGPWG RPDMAYFFFA RSIVAGEPVT LFRAADGSDA RRDFTYIDDV VKGCLGALDT AGKSTGSRSG RKSGPAPLRV YNLGNTSPVP VTRMVAILEK
401: LLGRKANKRV VTMPSNGDVP FTHANVSHAA HDFGYRPTTS LEAGLRHFVD WFVSYYKLDA KIAKPAAADD DKPAKKKKKN KAMSASS
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.