Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- endoplasmic reticulum 3
- golgi 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH42756 | Soybean | extracellular, golgi, plastid | 92.79 | 78.3 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 79.81 | 73.61 |
| KRH31569 | Soybean | mitochondrion | 79.57 | 71.64 |
| KRG97348 | Soybean | endoplasmic reticulum | 74.76 | 70.84 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 76.2 | 70.76 |
| CDX77481 | Canola | endoplasmic reticulum | 76.44 | 70.2 |
| Solyc09g092330.1.1 | Tomato | nucleus | 76.2 | 70.13 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 76.44 | 70.04 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 76.68 | 69.96 |
| CDX92990 | Canola | endoplasmic reticulum | 76.68 | 69.96 |
| CDY53207 | Canola | endoplasmic reticulum | 76.44 | 69.89 |
| CDX85133 | Canola | endoplasmic reticulum | 76.44 | 69.74 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 76.92 | 69.57 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 76.92 | 69.57 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 76.68 | 69.35 |
| CDY64583 | Canola | endoplasmic reticulum | 76.68 | 69.35 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 74.52 | 68.28 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 70.19 | 67.44 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 69.71 | 66.82 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 70.43 | 66.14 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 69.71 | 65.32 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 69.47 | 65.24 |
| KRH04016 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 65.87 | 63.72 |
| KRH57292 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 65.62 | 63.64 |
| KRH02967 | Soybean | nucleus | 65.38 | 63.11 |
| KRH72376 | Soybean | endoplasmic reticulum, mitochondrion | 65.14 | 62.88 |
| KRH65316 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 65.38 | 62.1 |
| KRH76209 | Soybean | endoplasmic reticulum, plastid | 64.9 | 61.64 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 70.43 | 60.41 |
| KRH40009 | Soybean | plastid | 58.89 | 60.2 |
| Zm00001d049804_P001 | Maize | plasma membrane | 61.06 | 56.7 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 65.87 | 56.26 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 60.58 | 56.0 |
| Os08t0526100-01 | Rice | plastid | 63.94 | 55.65 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 63.7 | 55.44 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 63.7 | 55.32 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 65.62 | 55.26 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 65.87 | 55.02 |
| TraesCS7D01G257800.1 | Wheat | plastid | 64.66 | 54.9 |
| TraesCS7A01G256600.1 | Wheat | plastid | 64.66 | 54.9 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 63.46 | 54.89 |
| TraesCS7B01G153900.1 | Wheat | plastid | 64.9 | 54.88 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 63.46 | 54.77 |
| HORVU7Hr1G053260.2 | Barley | plastid | 64.18 | 54.49 |
| HORVU5Hr1G075660.1 | Barley | plastid | 63.7 | 52.17 |
| KRH51264 | Soybean | plastid | 22.84 | 27.07 |
| KRH60045 | Soybean | extracellular | 22.12 | 26.29 |
| KRH41316 | Soybean | extracellular, golgi | 22.12 | 26.29 |
| KRH59827 | Soybean | extracellular, golgi | 21.63 | 25.71 |
| KRH41129 | Soybean | nucleus | 21.63 | 25.71 |
| KRH77652 | Soybean | plastid | 22.36 | 23.79 |
| KRH27832 | Soybean | plastid | 21.63 | 23.2 |
| KRH43065 | Soybean | golgi, mitochondrion, plastid | 21.63 | 21.63 |
| KRH11871 | Soybean | golgi, plastid | 21.39 | 21.45 |
| KRH36892 | Soybean | golgi, mitochondrion | 21.15 | 21.2 |
| KRH59194 | Soybean | golgi, mitochondrion | 20.91 | 20.91 |
| KRH26241 | Soybean | cytosol | 2.64 | 20.75 |
| KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 3.37 | 20.29 |
| KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 3.37 | 20.29 |
| KRH27429 | Soybean | cytosol, mitochondrion, plastid | 21.88 | 13.6 |
| KRH21867 | Soybean | cytosol, mitochondrion, plastid | 21.88 | 13.6 |
| KRH43408 | Soybean | nucleus | 21.63 | 13.47 |
| KRH13001 | Soybean | cytosol, mitochondrion, plastid | 21.63 | 13.47 |
| KRH46062 | Soybean | cytosol | 19.71 | 13.4 |
| KRG98907 | Soybean | cytosol, mitochondrion, peroxisome | 20.91 | 13.18 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 19.23 | 12.42 |
| KRH16155 | Soybean | cytosol | 18.99 | 12.06 |
| KRH57264 | Soybean | endoplasmic reticulum | 2.88 | 5.74 |
| KRH03995 | Soybean | plastid | 3.61 | 4.97 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 2.88 | 4.32 |
| KRH57441 | Soybean | cytosol | 3.12 | 4.18 |
Protein Annotations
| EntrezGene:100818071 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EMBL:ACUP02003292 | InterPro:Epimerase_deHydtase |
| EnsemblPlantsGene:GLYMA_05G152300 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016857 | GO:GO:0050662 | UniProt:I1K3S8 | EnsemblPlants:KRH58854 | ProteinID:KRH58854 |
| ProteinID:KRH58854.1 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 | PANTHER:PTHR43574 |
| PANTHER:PTHR43574:SF10 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0002339846 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:+:34589643..34591521
Molecular Weight (calculated)
46000.4 Da
IEP (calculated)
10.109
GRAVY (calculated)
-0.127
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSPDTSKT IKLVRNNSYL RRLNISFKIL FLLLALLLLY TLSTHHHHLP LSSAWENQVR HSALPRRPNG MSVLVTGAAG FVGSHCSLAL KKRGDGVLGL
101: DNFNPYYDPS LKRARQHLLA KHRILIIEAD LNDAPLLAKL FDVVSFSHVL HLAAQAGVRY AMQNPQSYVA SNIAGFVTLL EASKTSNPQP AIVWASSSSV
201: YGLNNESPFS ELHRTDQPAS LYAATKKAGE AIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTKSI LQGKPIDVYQ TQDEREVARD FTYIDDVVKG
301: CLGALDTAEK STGGGGKKHG AAQLRVYNLG NTSPVPVGKL VSVLETLLRV KAKKHVIKMP RNGDVPFTHA NVSLAWRDFG YKPTTDLATG LRKFVQWYVG
401: YYGVRLGVEK EKISLD
101: DNFNPYYDPS LKRARQHLLA KHRILIIEAD LNDAPLLAKL FDVVSFSHVL HLAAQAGVRY AMQNPQSYVA SNIAGFVTLL EASKTSNPQP AIVWASSSSV
201: YGLNNESPFS ELHRTDQPAS LYAATKKAGE AIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTKSI LQGKPIDVYQ TQDEREVARD FTYIDDVVKG
301: CLGALDTAEK STGGGGKKHG AAQLRVYNLG NTSPVPVGKL VSVLETLLRV KAKKHVIKMP RNGDVPFTHA NVSLAWRDFG YKPTTDLATG LRKFVQWYVG
401: YYGVRLGVEK EKISLD
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.