Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 2
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0171500-01 | |
| Os12t0169800-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | Os11t0171500-01 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Os12t0169800-00 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 85.34 | 86.03 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 83.53 | 85.42 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 80.12 | 83.47 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 79.92 | 82.57 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 79.72 | 82.54 |
| Os08t0526100-01 | Rice | plastid | 78.92 | 82.22 |
| HORVU5Hr1G075660.1 | Barley | plastid | 79.12 | 77.56 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 61.45 | 69.07 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 60.84 | 68.4 |
| Os06t0187200-01 | Rice | golgi, peroxisome | 41.77 | 67.31 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 59.64 | 66.89 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 55.02 | 65.87 |
| CDX77481 | Canola | endoplasmic reticulum | 58.63 | 64.46 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 58.63 | 64.32 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 58.23 | 64.3 |
| CDX85133 | Canola | endoplasmic reticulum | 58.63 | 64.04 |
| KRG97348 | Soybean | endoplasmic reticulum | 56.22 | 63.78 |
| Solyc09g092330.1.1 | Tomato | nucleus | 57.63 | 63.5 |
| CDY64583 | Canola | endoplasmic reticulum | 58.63 | 63.48 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 58.63 | 63.48 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 58.63 | 63.48 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 57.03 | 63.39 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 55.02 | 63.13 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 58.23 | 63.04 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 57.63 | 62.94 |
| CDX92990 | Canola | endoplasmic reticulum | 57.63 | 62.94 |
| CDY53207 | Canola | endoplasmic reticulum | 57.43 | 62.86 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 56.83 | 62.33 |
| KRH31569 | Soybean | mitochondrion | 57.63 | 62.12 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 60.04 | 61.65 |
| Os02t0791500-01 | Rice | endoplasmic reticulum, golgi, plastid | 54.02 | 61.56 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 53.21 | 61.2 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 55.42 | 55.98 |
| Os03t0249500-01 | Rice | plastid | 53.61 | 55.17 |
| Os09t0323000-01 | Rice | cytosol | 19.68 | 26.56 |
| Os05t0595100-01 | Rice | plastid | 17.87 | 25.14 |
| Os09t0526700-01 | Rice | cytosol | 17.87 | 23.86 |
| Os08t0374800-01 | Rice | golgi | 19.08 | 23.28 |
| Os04t0618200-02 | Rice | golgi | 18.07 | 23.02 |
| Os08t0129700-01 | Rice | mitochondrion | 18.27 | 22.41 |
| Os07t0139400-01 | Rice | plasma membrane | 17.87 | 21.14 |
| Os03t0278200-01 | Rice | nucleus, plasma membrane | 18.27 | 13.48 |
| Os05t0203400-00 | Rice | plastid | 8.43 | 12.57 |
| Os02t0678400-01 | Rice | plasma membrane | 3.01 | 4.82 |
| Os03t0249400-01 | Rice | nucleus, plasma membrane | 0.6 | 2.36 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:4347499 | ProteinID:BAF25509.1 | ProteinID:BAT08840.1 |
| ProteinID:EEE70003.1 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 |
| GO:GO:0050662 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | EnsemblPlantsGene:Os09g0504000 | EnsemblPlants:Os09t0504000-01 | PFAM:PF01370 |
| PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF7 | UniProt:Q0J0N3 | SUPFAM:SSF51735 | TMHMM:TMhelix |
| UniParc:UPI0000DD97E6 | RefSeq:XP_015651224.1 | SEG:seg | : | : | : |
Description
UDP-glucuronic acid 4-epimerase 4Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6). (Os09t0504000-01)
Coordinates
chr9:-:19486207..19488095
Molecular Weight (calculated)
52550.9 Da
IEP (calculated)
10.274
GRAVY (calculated)
0.004
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MPADAAAKGM KLERYASGAG AMLLLRRAAS GKVVSASSHL LFRATVLATM ALVFLFTFHY PSLLSRSFTL SSGAGAGEGG AAAHASHRSL LMSSSSASAS
101: AASVYGGAAW EKEVRRSAKP RKDGGIAVLV TGAAGFVGTH CSLALRARGD GVLGLDNFNA YYDPELKRAR QRLLAGRGVL VLDADINDAL LLEKLFDLVP
201: FTHVLHLAAQ AGVRYAMEAP QTYVASNVAG LVTVLEVAAK HADPQPAIVW ASSSSVYGLN TDAPFSEEHR TDRPASLYAA TKKAGEAIAH TYNHIYGLSI
301: TGLRFFTVYG PWGRPDMAYF FFAKSIVSGE PITLFRAADG ADARRDFTYI DDVVKGCLGA LDTSGKSTGS SKSGKKSGPA PLRVYNLGNT SPVPVTRMVA
401: ILEKLLGKKA NKRIVAMPSN GDVPFTHANV THAAHDFGYR PTTSLDAGLR HFVDWFADYY KLKLDVPKIA AKVAGAGKPS SSSASKKKKK AAAMSASS
101: AASVYGGAAW EKEVRRSAKP RKDGGIAVLV TGAAGFVGTH CSLALRARGD GVLGLDNFNA YYDPELKRAR QRLLAGRGVL VLDADINDAL LLEKLFDLVP
201: FTHVLHLAAQ AGVRYAMEAP QTYVASNVAG LVTVLEVAAK HADPQPAIVW ASSSSVYGLN TDAPFSEEHR TDRPASLYAA TKKAGEAIAH TYNHIYGLSI
301: TGLRFFTVYG PWGRPDMAYF FFAKSIVSGE PITLFRAADG ADARRDFTYI DDVVKGCLGA LDTSGKSTGS SKSGKKSGPA PLRVYNLGNT SPVPVTRMVA
401: ILEKLLGKKA NKRIVAMPSN GDVPFTHANV THAAHDFGYR PTTSLDAGLR HFVDWFADYY KLKLDVPKIA AKVAGAGKPS SSSASKKKKK AAAMSASS
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.