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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plasma membrane: 18557835
nucleus: 19621931
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0791500-01 Rice endoplasmic reticulum, golgi, plastid 7.09 2.06
Os03t0249500-01 Rice plastid 4.72 1.24
Os08t0526100-01 Rice plastid 3.15 0.84
Os06t0187200-01 Rice golgi, peroxisome 1.57 0.65
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 2.36 0.6
Os09t0323000-01 Rice cytosol 1.57 0.54
Os09t0526700-01 Rice cytosol 1.57 0.54
Os05t0203400-00 Rice plastid 0.79 0.3
Os03t0278200-01 Rice nucleus, plasma membrane 1.57 0.3
Os05t0595100-01 Rice plastid 0.79 0.28
Os04t0618200-02 Rice golgi 0.79 0.26
Os08t0129700-01 Rice mitochondrion 0.79 0.25
Os08t0374800-01 Rice golgi 0.79 0.25
Os07t0139400-01 Rice plasma membrane 0.79 0.24
Bra030933.1-P Field mustard cytosol 0.0 0.0
Os02t0678400-01 Rice plasma membrane 0.0 0.0
Protein Annotations
MapMan:17.1.3.1.22Gene3D:3.30.70.600EntrezGene:4332257EntrezGene:4348185ProteinID:AAM74244.1ProteinID:AAP52338.1
ProteinID:ABF94976.1EMBL:AK062522EMBL:AK121628ProteinID:BAF11474.1ProteinID:BAF26146.1ProteinID:BAS83275.1
ProteinID:BAT10064.1ProteinID:EAZ15433.1ProteinID:EAZ26276.1GO:GO:0002181GO:GO:0003674GO:GO:0003735
GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015935GO:GO:0019538GO:GO:0022627InterPro:IPR036838HAMAP:MF_00508EnsemblPlantsGene:Os03g0249400
EnsemblPlants:Os03t0249400-01PFAM:PF00338PRINTS:PR00971PANTHER:PTHR11700PANTHER:PTHR11700:SF18UniProt:Q10P27
InterPro:Ribosomal_S10InterPro:Ribosomal_S10_domInterPro:Ribosomal_S10_dom_sfInterPro:Ribosomal_S10_euk/arcSMART:SM01403SUPFAM:SSF54999
TIGRFAMs:TIGR01046UniParc:UPI0000DB4184RefSeq:XP_015614818.1RefSeq:XP_015628712.1::
Description
Similar to 40S ribosomal protein S20 (S22) (Fragment). (Os03t0249400-01)
Coordinates
chr3:+:7884815..7886786
Molecular Weight (calculated)
13959.1 Da
IEP (calculated)
10.174
GRAVY (calculated)
-0.182
Length
127 amino acids
Sequence
(BLAST)
001: MAAAAVYGGM KGGKLGVEEA HELQLNRIRI TLSSKNVKNL EKVCADLVKG AKDKQLRVKG PVRIPTKVLH ITTRKSPCGE GTNTWDRFEF RIHKRVIDLI
101: SSPDVVKQIT SITIEPGVEV EVTIADV
Best Arabidopsis Sequence Match ( AT3G45030.1 )
(BLAST)
001: MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP
101: DVVKQITSIT IEPGVEVEVT IADS
Arabidopsis Description
RPS20C40S ribosomal protein S20-1 [Source:UniProtKB/Swiss-Prot;Acc:P49200]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.