Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- endoplasmic reticulum 2
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 96.9 | 97.77 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 83.85 | 84.04 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 75.66 | 78.98 |
| KRH31569 | Soybean | mitochondrion | 78.54 | 76.84 |
| KRG97348 | Soybean | endoplasmic reticulum | 74.11 | 76.31 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 70.13 | 76.2 |
| CDX77481 | Canola | endoplasmic reticulum | 75.89 | 75.72 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 75.89 | 75.55 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 76.77 | 75.43 |
| CDX85133 | Canola | endoplasmic reticulum | 75.89 | 75.22 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 76.55 | 75.22 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 76.55 | 75.22 |
| CDY64583 | Canola | endoplasmic reticulum | 76.33 | 75.0 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 75.22 | 74.56 |
| CDX92990 | Canola | endoplasmic reticulum | 75.22 | 74.56 |
| CDY53207 | Canola | endoplasmic reticulum | 75.0 | 74.51 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 67.26 | 68.62 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 66.81 | 68.17 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 66.15 | 67.34 |
| Solyc03g083550.1.1 | Tomato | golgi | 59.96 | 66.75 |
| Solyc10g018260.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 63.5 | 65.98 |
| Solyc01g091200.2.1 | Tomato | nucleus | 62.61 | 65.06 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 70.8 | 64.91 |
| Solyc05g050990.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion | 62.39 | 64.83 |
| Solyc07g006220.1.1 | Tomato | nucleus | 59.29 | 63.06 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 67.48 | 62.89 |
| Solyc12g010540.1.1 | Tomato | endoplasmic reticulum | 59.96 | 62.73 |
| Solyc08g079440.1.1 | Tomato | nucleus | 59.96 | 60.9 |
| Os08t0526100-01 | Rice | plastid | 62.83 | 59.41 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 62.61 | 59.2 |
| Zm00001d049804_P001 | Maize | plasma membrane | 58.63 | 59.15 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 63.72 | 59.14 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 64.38 | 58.91 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.61 | 58.84 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.61 | 58.71 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 58.41 | 58.67 |
| HORVU7Hr1G053260.2 | Barley | plastid | 63.27 | 58.37 |
| TraesCS7D01G257800.1 | Wheat | plastid | 63.27 | 58.37 |
| TraesCS7B01G153900.1 | Wheat | plastid | 63.5 | 58.33 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 61.73 | 58.25 |
| TraesCS7A01G256600.1 | Wheat | plastid | 63.05 | 58.16 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 63.5 | 57.63 |
| HORVU5Hr1G075660.1 | Barley | plastid | 62.83 | 55.91 |
| Solyc12g055930.1.1 | Tomato | cytosol, extracellular, golgi | 21.46 | 27.87 |
| Solyc08g080570.2.1 | Tomato | cytosol | 21.24 | 27.35 |
| Solyc08g082440.2.1 | Tomato | cytosol, golgi | 20.58 | 26.5 |
| Solyc12g006410.1.1 | Tomato | unclear | 20.13 | 22.81 |
| Solyc02g030230.2.1 | Tomato | mitochondrion | 20.8 | 22.6 |
| Solyc02g069580.2.1 | Tomato | golgi, mitochondrion | 20.13 | 21.82 |
| Solyc07g043550.2.1 | Tomato | cytosol, unclear | 14.16 | 21.19 |
| Solyc08g069110.2.1 | Tomato | unclear | 19.91 | 13.82 |
| Solyc07g062130.2.1 | Tomato | extracellular, unclear | 20.58 | 13.8 |
| Solyc10g007480.2.1 | Tomato | nucleus | 15.71 | 12.03 |
| Solyc08g080140.2.1 | Tomato | extracellular | 3.32 | 4.98 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 |
| UniProt:K4CWQ9 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF16363 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF10 | SUPFAM:SSF51735 | EnsemblPlantsGene:Solyc09g092330.1 | EnsemblPlants:Solyc09g092330.1.1 | TMHMM:TMhelix |
| UniParc:UPI000276BB83 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:71459064..71460422
Molecular Weight (calculated)
50122.2 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.212
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTIMASPPD TSKTTKLERY NSYIRRVNST KLIAASSKLL FRVTLLVALL LIFFFTINYP PLTSEKSFNN NIHTTTHNLL SSAIYGGGAS WEKQVRHSST
101: PHRPNGLSVL VTGAAGFVGS HCSLALKKRG DGVLGLDNFN SYYDPSLKRA RQDQLSKHQI FIVEGDINDT ELLKKLFDIV PFTHILHLAA QAGVRYAMQN
201: PLSYVNSNVA GFVNLLEIAK AADPQPAIVW ASSSSVYGLN TKVPFSEDHR TDQPASLYAA TKKAGEAIAH TYNHIYGLSL TGLRFFTVYG PWGRPDMAYF
301: FFTKDMIQGK SINVYVTQDD KEVARDFTYI DDIVKGCVGA LDTAEKSTGS GGKKRGPAQL RVYNLGNTSP VSVKKLVAIL ENLLNLKAKK FFIKMPRNGD
401: VPFTHANVSL ALRDFGYKPT TDLSSGLRKF VKWYVSYYGI QSRVKKESEG EK
101: PHRPNGLSVL VTGAAGFVGS HCSLALKKRG DGVLGLDNFN SYYDPSLKRA RQDQLSKHQI FIVEGDINDT ELLKKLFDIV PFTHILHLAA QAGVRYAMQN
201: PLSYVNSNVA GFVNLLEIAK AADPQPAIVW ASSSSVYGLN TKVPFSEDHR TDQPASLYAA TKKAGEAIAH TYNHIYGLSL TGLRFFTVYG PWGRPDMAYF
301: FFTKDMIQGK SINVYVTQDD KEVARDFTYI DDIVKGCVGA LDTAEKSTGS GGKKRGPAQL RVYNLGNTSP VSVKKLVAIL ENLLNLKAKK FFIKMPRNGD
401: VPFTHANVSL ALRDFGYKPT TDLSSGLRKF VKWYVSYYGI QSRVKKESEG EK
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.