Factsheet for Solyc05g050990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
endoplasmic reticulum 1
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	98.85	98.85
Solyc01g091200.2.1	Tomato	nucleus	90.11	90.11
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	87.13	87.13
VIT_15s0048g00330.t01	Wine grape	plastid	82.99	84.54
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	83.45	84.42
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	83.91	84.3
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	82.76	83.72
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	82.76	83.72
KRH76209	Soybean	endoplasmic reticulum, plastid	83.45	82.88
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	82.3	82.49
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	82.99	82.42
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	82.53	77.2
Solyc03g083550.1.1	Tomato	golgi	69.66	74.63
Solyc08g079440.1.1	Tomato	nucleus	72.87	71.24
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	65.75	66.2
Solyc07g006220.1.1	Tomato	nucleus	64.6	66.12
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	62.53	62.82
Solyc09g092330.1.1	Tomato	nucleus	64.83	62.39
Solyc08g080570.2.1	Tomato	cytosol	20.69	25.64
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	20.23	25.29
Solyc08g082440.2.1	Tomato	cytosol, golgi	19.31	23.93
Solyc07g043550.2.1	Tomato	cytosol, unclear	15.4	22.19
Solyc02g030230.2.1	Tomato	mitochondrion	20.92	21.88
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	20.92	21.82
Solyc12g006410.1.1	Tomato	unclear	20.0	21.8
Solyc08g069110.2.1	Tomato	unclear	20.92	13.98
Solyc07g062130.2.1	Tomato	extracellular, unclear	20.69	13.35
Solyc10g007480.2.1	Tomato	nucleus	16.09	11.86
Solyc08g080140.2.1	Tomato	extracellular	3.22	4.65

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	UniProt:K4C1D1	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim
PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc05g050990.1
EnsemblPlants:Solyc05g050990.1.1	TMHMM:TMhelix	UniParc:UPI0002767423	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:61200987..61202294

Molecular Weight (calculated)

48301.2 Da

IEP (calculated)

10.324

GRAVY (calculated)

-0.197

Length

435 amino acids

Sequence
(BLAST)

001: MSQMKHIDNT PSTPGKFKIE KSPYHRLRLQ FSLAKIIFWS LVFVGLIFVF FYRSPSSSSH VSSDLFRRSL RTSSYGGPAW EKKIKASTKP RSSNGLCVLV
101: TGAAGFVGTH VSAALKRRGD GVLGLDNFND YYDPSLKRAR QELLERSGVY IVEADINDAT LLKKLFEIVA FTHVMHLAAQ AGVRYAMENP SSYVHSNIAG
201: LVNMLEVCKS VNPQPSIVWA SSSSVYGLNT KVPFSEWDRT DQPASLYAAT KKAGEEIAHT YNHIYGLSIT GLRFFTVYGP WGRPDMAYFF FTRDILKGKS
301: IPIFEAANHG TVARDFTYID DIVKGCLGAL DTAKKSTGSG GKKKGPAQLR VFNLGNTSPV PVSDLVSILE KLLKVKAKRL IMKLPRNGDV QFTHANISLA
401: QKEFGYKPTT DLQTGLKKFV RWYLSYYGNG KKSAQ

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.