Factsheet for Solyc08g069110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 2
plastid 1
golgi 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g069110.2.1
Solyc08g080140.2.1
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	Solyc08g080140.2.1	AT1G63000.1	21798944
AT1G78570.1	Solyc08g069110.2.1	AT1G78570.1	21798944
AT1G78570.1	Solyc10g074680.1.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	97.39	96.94
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	83.1	82.34
KRH16155	Soybean	cytosol	78.65	78.17
KRH04933	Soybean	cytosol, mitochondrion, plastid	76.19	77.02
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	78.96	76.83
CDY40003	Canola	cytosol, mitochondrion, plastid	78.49	76.27
CDY35137	Canola	cytosol, mitochondrion, plastid	78.49	76.27
Solyc08g080140.2.1	Tomato	extracellular	35.18	76.08
CDX97601	Canola	cytosol, mitochondrion, plastid	75.42	76.01
CDX98494	Canola	cytosol, mitochondrion, plastid	75.42	76.01
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	77.57	75.94
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	78.19	75.74
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	77.88	75.67
CDY20084	Canola	cytosol, mitochondrion, peroxisome	74.35	75.16
CDY32340	Canola	cytosol, mitochondrion, peroxisome	74.04	74.96
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	76.65	74.81
CDY24092	Canola	cytosol, mitochondrion, peroxisome	76.34	74.74
CDY45116	Canola	cytosol, mitochondrion, peroxisome	76.34	74.74
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	73.89	74.69
AT3G14790.2	Thale cress	mitochondrion	76.5	74.66
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	76.8	74.4
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	75.88	74.29
EER95086	Sorghum	cytosol, mitochondrion, plastid	76.65	74.26
CDY60210	Canola	cytosol, mitochondrion, peroxisome	76.19	74.25
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	76.19	74.25
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	76.34	73.96
Os03t0278200-01	Rice	nucleus, plasma membrane	76.65	73.93
TraesCS4A01G099200.1	Wheat	cytosol	76.65	73.93
Solyc07g062130.2.1	Tomato	extracellular, unclear	76.5	73.89
Zm00001d028654_P002	Maize	cytosol	76.19	73.81
Solyc10g007480.2.1	Tomato	nucleus	66.51	73.39
TraesCS4D01G206000.1	Wheat	mitochondrion	76.65	73.17
TraesCS4B01G205100.3	Wheat	mitochondrion	76.5	73.02
CDX88455	Canola	cytosol, peroxisome, plastid	78.03	71.85
CDY25850	Canola	cytosol, mitochondrion, peroxisome	46.24	70.33
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	63.9	68.76
HORVU4Hr1G059120.2	Barley	plastid	76.19	68.6
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	13.98	26.15
Solyc08g082440.2.1	Tomato	cytosol, golgi	13.21	24.5
Solyc07g043550.2.1	Tomato	cytosol, unclear	11.21	24.17
Solyc08g080570.2.1	Tomato	cytosol	12.9	23.93
Solyc12g006410.1.1	Tomato	unclear	13.52	22.06
Solyc02g030230.2.1	Tomato	mitochondrion	13.67	21.39
Solyc03g083550.1.1	Tomato	golgi	13.21	21.18
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	13.98	20.92
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	13.36	20.86
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	13.82	20.69
Solyc07g006220.1.1	Tomato	nucleus	13.21	20.24
Solyc08g079440.1.1	Tomato	nucleus	13.82	20.22
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	13.36	20.09
Solyc01g091200.2.1	Tomato	nucleus	13.36	20.0
Solyc09g092330.1.1	Tomato	nucleus	13.82	19.91
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	13.06	19.68

Protein Annotations

EnsemblPlants:Solyc08g069110.2.1	EnsemblPlantsGene:Solyc08g069110.2	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	SUPFAM:SSF51735
UniParc:UPI000276ACCD	UniProt:K4CMD1	MapMan:3.13.6.1	:	:	:

Description

No Description!

Coordinates

chr8:+:58175828..58177992

Molecular Weight (calculated)

73429.2 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.293

Length

651 amino acids

Sequence
(BLAST)

001: MSSEPAPYVP KNVLITGAAG FIPSHVTNRL TKLYPNYRIV ALDKLDYCSS LKNLEPSYSC PNFKFVKADI TSADLINHLL VEEKIDTIMH FAAQTHVDNS
101: FGNSFEFTIN NIYGTHVLLE ACKLTKCIKR FIHVSTDEVY GETDLETDIG NPEASQLLPT NPYSATKAGA EMLVMAYNRS YGLPTITTRG NNVYGPNQFP
201: EKLIPKFIIL AMKGERLPIH GDGTNVRSYL YSADVAEAFD VILHKGVIGH VYNIGTKKER AVLDVAADIC KLVGKNAKEV IELVQDRPFN DQRYFLDDQK
301: LKKLGWQERT TWEAGLKMTL DWYTKNPDWW GDITGALHPH PRISNIAPSH DEGCLLQLVK GSKKASGSDL KFLIYGKTGW IGGLLGKICE ERGIAYEYGL
401: GRLQDRSSLM QDMIRVKPTH VFNAAGVTGR PNVDWCESHK VETIRTNVAG TLTLADICRE ADILVMNFAT GCIFEYDEQH PLGSGIGFKE EDKPNFTGSF
501: YSKTKAMVEE LLKEYNNVCT LRVRMPISSD LSNPRNFITK ITRYDKVVNI PNSMTVLDEL LPISIEMAKR NCRGIWNFTN PGVVSHNEIL EMYRDYIDPK
601: FKWQNFDLQE QAKVIVAPRS NNELDMTKLK NEFPELLSIK DSIIKYVFGP N

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.