Factsheet for Bra026009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35137	Canola	cytosol, mitochondrion, plastid	99.26	99.55
CDY40003	Canola	cytosol, mitochondrion, plastid	98.51	98.81
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	90.62	90.9
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	83.04	85.98
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	84.97	85.86
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	81.25	84.78
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	83.63	84.51
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	83.93	84.43
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.76	84.28
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	76.79	83.09
TraesCS4A01G099200.1	Wheat	cytosol	82.59	82.22
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	82.14	82.14
Os03t0278200-01	Rice	nucleus, plasma membrane	82.14	81.78
EER95086	Sorghum	cytosol, mitochondrion, plastid	81.7	81.7
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	81.4	81.4
TraesCS4D01G206000.1	Wheat	mitochondrion	82.59	81.38
TraesCS4B01G205100.3	Wheat	mitochondrion	82.44	81.23
Zm00001d028654_P002	Maize	cytosol	80.51	80.51
Bra027005.1-P	Field mustard	cytosol	35.27	79.8
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.79	78.54
Solyc08g069110.2.1	Tomato	unclear	75.74	78.19
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	75.89	77.98
HORVU4Hr1G059120.2	Barley	plastid	82.29	76.49
KRH16155	Soybean	cytosol	74.4	76.34
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.07	76.24
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	68.3	75.87
Bra019776.1-P	Field mustard	cytosol	36.01	75.39
Bra030933.1-P	Field mustard	cytosol	20.54	74.59
Bra027732.1-P	Field mustard	golgi	13.84	27.11
Bra019257.1-P	Field mustard	plastid	13.54	26.15
Bra035262.1-P	Field mustard	golgi	12.95	25.07
Bra013744.1-P	Field mustard	cytosol, golgi	12.95	25.0
Bra016757.1-P	Field mustard	cytosol	12.95	24.79
Bra019785.1-P	Field mustard	cytosol	12.35	24.78
Bra027626.1-P	Field mustard	cytosol	12.8	24.5
Bra039253.1-P	Field mustard	cytosol	12.5	24.21
Bra020917.1-P	Field mustard	golgi, mitochondrion	13.54	22.14
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	14.29	22.07
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.99	21.91
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.99	21.61
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	13.69	21.4
Bra032409.1-P	Field mustard	mitochondrion	13.24	21.24
Bra033746.1-P	Field mustard	golgi	12.65	20.63
Bra027557.1-P	Field mustard	golgi	12.5	20.39
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.95	20.28
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.69	20.18
Bra014987.1-P	Field mustard	endoplasmic reticulum	13.54	20.04
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.65	19.77
Bra013466.1-P	Field mustard	mitochondrion	13.54	19.65
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	13.39	19.57
Bra005387.1-P	Field mustard	golgi, mitochondrion	12.8	18.94

Protein Annotations

EnsemblPlants:Bra026009.1	EnsemblPlants:Bra026009.1-P	EnsemblPlantsGene:Bra026009	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
SEG:seg	SUPFAM:SSF51735	UniParc:UPI000253F284	UniProt:M4EB50	MapMan:3.13.6.1	:

Description

AT1G78570 (E=0.0) RHM1, ROL1, ATRHM1 | RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic

Coordinates

chrA06:-:6536382..6538494

Molecular Weight (calculated)

75553.1 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.351

Length

672 amino acids

Sequence
(BLAST)

001: MASSYTPKNI LITGAAGFIA SHVANRLIRT YPDYKIVVLD KLDYCSNLKN LNPSKHSPNF KFVKGDIASA DLVNYLLITE RIDTIMHFAA QTHVDNSFGN
101: SFEFTKNNIY GTHVLLEACK VTGQIRRFIH VSTDEVYGET DEDAVVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKL
201: IPKFMLLAMR GKVLPIHGDG SNVRSYLYCE DVAEAFEVIL HKGEVGHVYN IGTKKERRVN DVAQDICKLF NMDPEANIKF VENRPFNDQR YFLDDEKLKI
301: LGWSERTTWE EGLKKTMEWY TQNPDWWGDV SGALLPHPRM LVMPGGRHFD GSEENSGAVA LSGNSSQSQS QMMVPTPRSS GSTQNPSLKF LIYGKTGWIG
401: GLLGQICEKQ GIAFEYGKGR LEDRSSLLQD ILTVKPTHVF NAAGVTGRPN VDWCESHKTE TIRANVAGTL TLADVCREHS LLLMNFATGC IFEYDENHPL
501: GSGIGFKEED TPNFTGSFYS KTKAMVEELL KEFDNVCTLR VRMPISSDLN NPRNFITKIS RYSKVVNIPN SMTVLDELLP ISIEMAKRNL KGIWNFTNPG
601: VVSHNEVLEM YRDYVDSDFK WANFTLEEQA KVIVAPRSNN ELDASKLKKE FPELLSIKES LIKYAFEPNK RT

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [cytosol,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.