Factsheet for Bra013466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78998	Canola	mitochondrion	86.39	97.32
CDX82768	Canola	mitochondrion	86.18	97.08
AT4G20460.1	Thale cress	golgi, mitochondrion	84.23	94.89
Bra020917.1-P	Field mustard	golgi, mitochondrion	82.29	92.7
Bra033746.1-P	Field mustard	golgi	74.08	83.25
Bra027557.1-P	Field mustard	golgi	73.22	82.28
Bra032409.1-P	Field mustard	mitochondrion	71.71	79.24
PGSC0003DMT400080637	Potato	golgi	67.6	78.25
KRH43065	Soybean	golgi, mitochondrion, plastid	69.98	77.88
KRH36892	Soybean	golgi, mitochondrion	69.55	77.59
Os04t0618200-02	Rice	golgi	65.44	77.49
KRH11871	Soybean	golgi, plastid	69.11	77.11
Solyc02g030230.2.1	Tomato	mitochondrion	69.11	76.92
KRH59194	Soybean	golgi, mitochondrion	69.11	76.92
GSMUA_Achr3P23390_001	Banana	mitochondrion	68.68	76.26
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	68.25	75.78
GSMUA_Achr11P...	Banana	cytosol, golgi	63.93	75.7
GSMUA_Achr11P...	Banana	mitochondrion	67.82	75.3
Os08t0129700-01	Rice	mitochondrion	65.87	75.12
PGSC0003DMT400054459	Potato	mitochondrion	67.6	75.06
EER95001	Sorghum	mitochondrion	65.87	74.94
GSMUA_Achr8P33320_001	Banana	mitochondrion	67.39	74.82
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	65.44	74.81
HORVU7Hr1G074300.2	Barley	golgi	65.44	74.81
HORVU5Hr1G077110.3	Barley	mitochondrion	67.82	74.58
Os07t0139400-01	Rice	plasma membrane	67.82	74.58
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	66.31	74.51
TraesCS2A01G460400.1	Wheat	unclear	66.31	74.51
TraesCS5A01G291300.1	Wheat	golgi	67.6	74.35
TraesCS2B01G482000.1	Wheat	golgi	66.09	74.27
TraesCS5D01G298700.1	Wheat	mitochondrion	67.39	74.11
TraesCS5B01G290300.1	Wheat	mitochondrion	67.39	74.11
TraesCS7A01G311100.1	Wheat	golgi	64.79	74.07
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	65.87	74.03
KXG27129	Sorghum	mitochondrion, plastid	66.31	73.98
GSMUA_Achr4P31860_001	Banana	mitochondrion	66.31	73.8
TraesCS7B01G210700.2	Wheat	golgi	65.44	73.37
EER95854	Sorghum	mitochondrion, plastid	67.39	72.56
Bra005387.1-P	Field mustard	golgi, mitochondrion	70.41	71.81
Bra027732.1-P	Field mustard	golgi	30.67	41.4
Bra035262.1-P	Field mustard	golgi	30.67	40.92
Bra013744.1-P	Field mustard	cytosol, golgi	30.67	40.8
Bra019257.1-P	Field mustard	plastid	30.67	40.8
Bra019785.1-P	Field mustard	cytosol	28.51	39.4
Bra016757.1-P	Field mustard	cytosol	28.94	38.18
Zm00001d017999_P002	Maize	mitochondrion	25.49	37.94
Bra027626.1-P	Field mustard	cytosol	28.51	37.61
Bra039253.1-P	Field mustard	cytosol	27.43	36.6
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	27.21	36.42
Bra030933.1-P	Field mustard	cytosol	8.86	22.16
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	20.52	22.14
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	20.09	21.38
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	19.22	20.7
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	19.01	20.47
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	18.79	20.28
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	19.01	20.23
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	19.65	19.96
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	19.65	19.78
Bra014987.1-P	Field mustard	endoplasmic reticulum	19.22	19.6
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	19.87	13.83
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	19.87	13.73
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	19.65	13.54
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	19.22	13.38
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	19.22	13.32
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	17.71	12.73
Bra019776.1-P	Field mustard	cytosol	3.67	5.3
Bra027005.1-P	Field mustard	cytosol	3.02	4.71

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra013466
EnsemblPlants:Bra013466.1	EnsemblPlants:Bra013466.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005575
GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016853	UniProt:M4DAF6	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349
PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI0002546BC7

Description

AT4G20460 (E=3e-224) | NAD-dependent epimerase/dehydratase family protein

Coordinates

chrA01:-:5827845..5830463

Molecular Weight (calculated)

50850.2 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.084

Length

463 amino acids

Sequence
(BLAST)

001: MLSFSRARSQ GRNTRPLTGG MDYLEPKRKT NVMGRVILVV SLTALCIIML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVEKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPEKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPKNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARFTNL QESLELVPYF
401: SFDSTLLSPC LSSGSASIFD FVCLFWSQYV VVRRIFAWDD GASFRSVIAA GWLRGHGDVG DDR

Best Arabidopsis Sequence Match ( AT4G20460.1 )
(BLAST)

001: MLSFSRARSQ GRNTRPLGGG MEYLEPKRKS NVMGKIILVV SLTALCIFML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW
401: QKTHPHGYAS S

Arabidopsis Description

Probable UDP-arabinose 4-epimerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUN3]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.