Factsheet for TraesCS5A01G291300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G298700.1	Wheat	mitochondrion	99.52	99.52
TraesCS5B01G290300.1	Wheat	mitochondrion	99.29	99.29
HORVU5Hr1G077110.3	Barley	mitochondrion	98.57	98.57
Os07t0139400-01	Rice	plasma membrane	90.02	90.02
EER95854	Sorghum	mitochondrion, plastid	88.36	86.51
CDY71965	Canola	cytosol, mitochondrion	46.79	82.77
AT2G34850.2	Thale cress	cytosol	46.08	82.2
Solyc07g043550.2.1	Tomato	cytosol, unclear	58.43	81.46
GSMUA_Achr4P31860_001	Banana	mitochondrion	78.86	79.81
VIT_10s0003g05640.t01	Wine grape	golgi	78.86	79.43
TraesCS2A01G460400.1	Wheat	unclear	76.25	77.91
AT4G20460.1	Thale cress	golgi, mitochondrion	76.01	77.86
CDX78998	Canola	mitochondrion	75.77	77.62
PGSC0003DMT400080637	Potato	golgi	73.63	77.5
CDX82768	Canola	mitochondrion	75.53	77.37
TraesCS7A01G311100.1	Wheat	golgi	74.35	77.28
CDY09555	Canola	mitochondrion	76.48	76.67
CDY52524	Canola	golgi	77.2	76.65
AT1G30620.4	Thale cress	golgi, mitochondrion	76.25	76.61
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	75.77	76.5
CDY31644	Canola	golgi	76.96	76.42
Bra032409.1-P	Field mustard	mitochondrion	76.01	76.37
KRH59194	Soybean	golgi, mitochondrion	75.3	76.2
CDY02312	Canola	mitochondrion	76.01	76.19
KRH36892	Soybean	golgi, mitochondrion	75.06	76.14
PGSC0003DMT400041159	Potato	golgi, mitochondrion	70.07	76.03
PGSC0003DMT400054459	Potato	mitochondrion	75.3	76.02
Solyc02g030230.2.1	Tomato	mitochondrion	75.06	75.96
Bra020917.1-P	Field mustard	golgi, mitochondrion	74.11	75.91
KRH43065	Soybean	golgi, mitochondrion, plastid	74.82	75.72
KRH11871	Soybean	golgi, plastid	74.58	75.66
Bra027557.1-P	Field mustard	golgi	73.4	75.0
CDY13102	Canola	golgi	73.4	75.0
CDY29113	Canola	golgi	73.4	75.0
Bra033746.1-P	Field mustard	golgi	72.92	74.51
CDY49015	Canola	golgi	72.68	74.27
CDY49498	Canola	golgi	72.21	73.79
Solyc12g006410.1.1	Tomato	unclear	68.88	72.68
Bra005387.1-P	Field mustard	golgi, mitochondrion	77.91	72.25
AT5G44480.1	Thale cress	mitochondrion	72.68	70.18
Bra013466.1-P	Field mustard	mitochondrion	74.35	67.6
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	35.15	41.81
TraesCS5A01G183100.1	Wheat	plastid	35.15	39.47
TraesCS5A01G314800.1	Wheat	cytosol	33.49	38.32
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	18.53	21.2
TraesCS6A01G353200.1	Wheat	plastid	20.9	20.09
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	20.19	19.19
TraesCS7A01G256600.1	Wheat	plastid	22.09	18.98
TraesCS4A01G080300.1	Wheat	plastid	20.67	18.2
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	20.67	18.05
TraesCS4A01G099200.1	Wheat	cytosol	21.14	13.19
TraesCS6A01G257500.1	Wheat	peroxisome	2.61	3.67

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF18	SUPFAM:SSF51735
TIGRFAMs:TIGR01179	EnsemblPlantsGene:TraesCS5A01G291300	EnsemblPlants:TraesCS5A01G291300.1	InterPro:UDP_G4E	TIGR:cd05247	SEG:seg

Description

No Description!

Coordinates

chr5A:+:502219666..502222186

Molecular Weight (calculated)

46770.2 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.269

Length

421 amino acids

Sequence
(BLAST)

001: MLPTGRSRPQ PRPAPRSWSF SDMDFSDPKR NSRYLSKIIM VALLTAMCVV MLTQPPCHRK APSVFSIHEL GVTHVLVTGG AGYIGSHAAL RLLKDSFRVT
101: IVDNLSRGNI GAVKVLQNLF PDPGRLQFIH ADLGDPKAVN RIFAENAFDA VMHFAAVAYV GESTLEPLRY YHNITANTLV VLEAMATHNV KTLIYSSTCA
201: TYGEPEKMPI TEETPQFPIN PYGKAKKMAE DIILDFSKSR KSDMSVMILR YFNVIGSDPE GRLGEAPPPE LREHGRISGA CFDAALGIIP GLKVKGTDYE
301: TADGTCVRDY IDVTDLVDAH VKALNKAERG KVGIYNVGTG RGRSVKEFVE ACKKATGVDI KVDYFPRRPG DYAEVYSNPA RINRELNWTA QHTELQESLR
401: VAWTWQKKHR SGYADSGRYI F

Best Arabidopsis Sequence Match ( AT1G30620.1 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.