Factsheet for TraesCS7A01G256600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G153900.1	Wheat	plastid	97.96	97.56
TraesCS7D01G257800.1	Wheat	plastid	97.55	97.55
HORVU7Hr1G053260.2	Barley	plastid	94.08	94.08
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	81.63	83.51
Zm00001d049804_P001	Maize	plasma membrane	75.71	82.81
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	74.49	81.11
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	77.96	79.25
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	61.84	68.4
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	61.43	67.79
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	60.82	67.27
KRH58854	Soybean	endoplasmic reticulum, golgi	54.9	64.66
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	58.37	63.41
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	57.76	63.17
Solyc09g092330.1.1	Tomato	nucleus	58.16	63.05
CDX77481	Canola	endoplasmic reticulum	58.16	62.91
Bra014987.1-P	Field mustard	endoplasmic reticulum	58.16	62.78
CDX85133	Canola	endoplasmic reticulum	58.16	62.5
KRG97348	Soybean	endoplasmic reticulum	55.71	62.19
CDY64583	Canola	endoplasmic reticulum	58.37	62.17
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	58.37	62.17
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	54.9	61.98
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	58.16	61.96
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	57.55	61.84
AT3G23820.1	Thale cress	endoplasmic reticulum	57.96	61.74
TraesCS6A01G353200.1	Wheat	plastid	55.1	61.64
CDX92990	Canola	endoplasmic reticulum	57.35	61.62
CDY53207	Canola	endoplasmic reticulum	57.14	61.54
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	60.82	61.44
KRH31569	Soybean	mitochondrion	57.76	61.26
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	56.73	61.23
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	52.65	59.58
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	53.47	59.14
TraesCS4A01G080300.1	Wheat	plastid	55.71	57.11
KRH42756	Soybean	extracellular, golgi, plastid	55.1	54.77
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	17.35	24.01
TraesCS5A01G314800.1	Wheat	cytosol	17.76	23.64
TraesCS5A01G183100.1	Wheat	plastid	17.76	23.2
TraesCS5A01G291300.1	Wheat	golgi	18.98	22.09
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	16.53	22.01
TraesCS7A01G311100.1	Wheat	golgi	17.55	21.23
TraesCS2A01G460400.1	Wheat	unclear	17.76	21.12
TraesCS4A01G099200.1	Wheat	cytosol	18.57	13.48
TraesCS6A01G257500.1	Wheat	peroxisome	3.06	5.0

Protein Annotations

EnsemblPlants:TraesCS7A01G256600.1	EnsemblPlantsGene:TraesCS7A01G256600	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662
InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PANTHER:PTHR43574	PANTHER:PTHR43574:SF7	PFAM:PF01370
PRINTS:PR01713	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	MapMan:3.13.4.1	:

Description

No Description!

Coordinates

chr7A:+:245594974..245596446

Molecular Weight (calculated)

52298.6 Da

IEP (calculated)

10.811

GRAVY (calculated)

-0.080

Length

490 amino acids

Sequence
(BLAST)

001: MPHPSSSSSS SASVDAAAKG VKLERYASGG AALLMRRAGT SKIVAASSHL LFRATVLATL ALVCLFAVHY PSLLSRSFRL SAAASSSSPP RQTSRHRNLL
101: GSSSAYAGAA WEREVRRSAT PRRDGGMSVL VTGAAGFVGA HCALALRARG DGVLGLDNFN AYYEPALKRA RQRLLASRGV VVFGADINDA ALLERLFTVV
201: PFTHVLHLAA QAGVRYAMRA PQTYVASNVA GLVSVFEAAA RHADPQPAIV WASSSSVYGL NTDAPFSEDH RTDRPASLYA ATKKAGEAIA HAYNHIYGLS
301: ITGLRFFTVY GPWGRPDMAY FSFARSIVAG EPITLFRAAD GTDVRRDFTY IDDVVKGCLG ALDTAGKSTG SKSGKKRGPA PLRVYNLGNT SPVPVTRMVA
401: ILEKLLGKKA NKRVVTMPSN GDVPFTHANV SHAARDFRYH PTTSLDAGLR KFVEWFLQYY KIDPAKLAKG SRVGTKTTKK KSKGAMSAAS

Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)

001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA

Arabidopsis Description

GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.