Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 2
- golgi 3
- plastid 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | EES09373 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | EES16732 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049804_P001 | Maize | plasma membrane | 85.18 | 91.07 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 83.72 | 89.11 |
| TraesCS7B01G153900.1 | Wheat | plastid | 84.34 | 82.11 |
| TraesCS7D01G257800.1 | Wheat | plastid | 83.72 | 81.84 |
| TraesCS7A01G256600.1 | Wheat | plastid | 83.51 | 81.63 |
| HORVU7Hr1G053260.2 | Barley | plastid | 81.42 | 79.59 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 81.0 | 78.54 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 63.88 | 69.07 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 63.67 | 68.85 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 62.42 | 67.34 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 55.32 | 63.7 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 59.08 | 62.75 |
| CDX77481 | Canola | endoplasmic reticulum | 59.29 | 62.69 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 59.29 | 62.56 |
| CDX85133 | Canola | endoplasmic reticulum | 59.29 | 62.28 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 63.05 | 62.27 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 58.04 | 62.05 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 59.29 | 61.74 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 59.29 | 61.74 |
| CDY64583 | Canola | endoplasmic reticulum | 59.29 | 61.74 |
| Solyc09g092330.1.1 | Tomato | nucleus | 58.25 | 61.73 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 58.66 | 61.62 |
| CDX92990 | Canola | endoplasmic reticulum | 58.25 | 61.18 |
| CDY53207 | Canola | endoplasmic reticulum | 58.04 | 61.1 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 58.66 | 61.09 |
| EES05940 | Sorghum | endoplasmic reticulum, golgi, plastid | 55.53 | 60.59 |
| KRG97348 | Soybean | endoplasmic reticulum | 55.53 | 60.59 |
| OQU75981 | Sorghum | endoplasmic reticulum | 55.53 | 60.45 |
| KRH31569 | Soybean | mitochondrion | 58.25 | 60.39 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 54.7 | 60.37 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 56.99 | 60.13 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 53.24 | 58.89 |
| EER95171 | Sorghum | plastid | 55.74 | 55.62 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 55.32 | 53.75 |
| EER98731 | Sorghum | plastid | 20.04 | 26.23 |
| KXG36042 | Sorghum | cytosol | 19.62 | 25.82 |
| EER94859 | Sorghum | extracellular, golgi | 19.0 | 25.63 |
| EES14924 | Sorghum | endoplasmic reticulum, golgi, plastid | 19.0 | 21.51 |
| KXG27129 | Sorghum | mitochondrion, plastid | 18.37 | 21.2 |
| EER95001 | Sorghum | mitochondrion | 17.75 | 20.88 |
| EER95854 | Sorghum | mitochondrion, plastid | 17.75 | 19.77 |
| EER95078 | Sorghum | cytosol, mitochondrion, peroxisome | 19.0 | 13.54 |
| KXG21627 | Sorghum | mitochondrion | 19.0 | 13.27 |
| EER95086 | Sorghum | cytosol, mitochondrion, plastid | 18.58 | 13.24 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 3.13 | 4.89 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:8060967 | UniProt:C5YI52 | EnsemblPlants:EES14210 |
| ProteinID:EES14210 | ProteinID:EES14210.1 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016857 | GO:GO:0050662 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF7 | EnsemblPlantsGene:SORBI_3007G196800 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0001A87DB0 |
| RefSeq:XP_002444715.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:62849420..62852689
Molecular Weight (calculated)
51003.0 Da
IEP (calculated)
10.793
GRAVY (calculated)
-0.035
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAGVVDAAA KGVKLERHAV LLRRAAGAKH LVSASSHLLF RATVLATLAL VVLFAVHYPS LLSHSFTLSA APASPSSTPR SRHSHRSLLG SGASSSYGRG
101: AAWEREVRRS ATPRRDGALS VLVTGAAGFV GAHCSLALRA RGDGVVGLDN FNAYYDPSLK RARQRLLASR GVVVLDADIN DAALLERLLS AVPFTHVLHL
201: AAQAGVRHAM RAPQAYVASN VAGLVALFEA AARHADPQPA VVWASSSSVY GLNTEAPFSE DHRTDRPASL YAATKKAGEA IAHSYNHIYG LSITGLRFFT
301: VYGPWGRPDM AYFSFARSIV AGEPITLFRT ADGADARRDF TYIDDVVRGC LGALDTAGKS TGSKSGKKSG PAPLRVYNLG NTSPVPVTRM VAILEKLLGK
401: KAHKRVVTMP SNGDVPFTHA NVSHAARDFG YRPATSLEDG LRHFVDWFVR YYKVNVRGGG NVLAGKTAKR KSMPMSAAS
101: AAWEREVRRS ATPRRDGALS VLVTGAAGFV GAHCSLALRA RGDGVVGLDN FNAYYDPSLK RARQRLLASR GVVVLDADIN DAALLERLLS AVPFTHVLHL
201: AAQAGVRHAM RAPQAYVASN VAGLVALFEA AARHADPQPA VVWASSSSVY GLNTEAPFSE DHRTDRPASL YAATKKAGEA IAHSYNHIYG LSITGLRFFT
301: VYGPWGRPDM AYFSFARSIV AGEPITLFRT ADGADARRDF TYIDDVVRGC LGALDTAGKS TGSKSGKKSG PAPLRVYNLG NTSPVPVTRM VAILEKLLGK
401: KAHKRVVTMP SNGDVPFTHA NVSHAARDFG YRPATSLEDG LRHFVDWFVR YYKVNVRGGG NVLAGKTAKR KSMPMSAAS
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.