Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 91.07 | 85.18 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 84.82 | 84.44 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 82.81 | 76.18 |
| TraesCS7B01G153900.1 | Wheat | plastid | 83.48 | 76.02 |
| TraesCS7A01G256600.1 | Wheat | plastid | 82.81 | 75.71 |
| TraesCS7D01G257800.1 | Wheat | plastid | 82.81 | 75.71 |
| HORVU7Hr1G053260.2 | Barley | plastid | 80.8 | 73.88 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 64.51 | 65.24 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 63.84 | 64.56 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 62.5 | 63.06 |
| Zm00001d045078_P001 | Maize | extracellular, golgi | 57.37 | 62.23 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 56.7 | 61.06 |
| CDX77481 | Canola | endoplasmic reticulum | 61.16 | 60.49 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 61.16 | 60.35 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 60.71 | 60.31 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 65.18 | 60.21 |
| CDX85133 | Canola | endoplasmic reticulum | 61.16 | 60.09 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 60.71 | 59.65 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 61.16 | 59.57 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 61.16 | 59.57 |
| CDY64583 | Canola | endoplasmic reticulum | 61.16 | 59.57 |
| Zm00001d037087_P001 | Maize | endoplasmic reticulum | 58.48 | 59.55 |
| CDX92990 | Canola | endoplasmic reticulum | 60.49 | 59.43 |
| CDY53207 | Canola | endoplasmic reticulum | 60.27 | 59.34 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 60.71 | 59.13 |
| Zm00001d018350_P001 | Maize | plasma membrane | 57.81 | 59.0 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 58.93 | 58.93 |
| Solyc09g092330.1.1 | Tomato | nucleus | 59.15 | 58.63 |
| KRG97348 | Soybean | endoplasmic reticulum | 56.92 | 58.09 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 56.25 | 58.06 |
| KRH31569 | Soybean | mitochondrion | 59.82 | 58.01 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 57.81 | 57.05 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 55.13 | 57.04 |
| Zm00001d028427_P001 | Maize | plastid | 58.71 | 54.91 |
| Zm00001d047915_P001 | Maize | plastid | 58.26 | 54.49 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 56.92 | 51.72 |
| Zm00001d034293_P001 | Maize | plastid | 20.09 | 40.72 |
| Zm00001d037310_P001 | Maize | plastid | 25.45 | 37.5 |
| Zm00001d038116_P001 | Maize | plastid | 23.44 | 32.41 |
| Zm00001d017794_P001 | Maize | plastid | 24.78 | 29.76 |
| Zm00001d021249_P003 | Maize | cytosol | 19.64 | 24.24 |
| Zm00001d029151_P002 | Maize | extracellular, golgi | 19.2 | 24.23 |
| Zm00001d005598_P001 | Maize | plastid | 19.42 | 23.84 |
| Zm00001d032346_P002 | Maize | endoplasmic reticulum, golgi, plastid | 19.42 | 20.57 |
| Zm00001d020093_P002 | Maize | golgi | 13.39 | 19.87 |
| Zm00001d028825_P001 | Maize | golgi, mitochondrion | 18.3 | 19.43 |
| Zm00001d047683_P003 | Maize | mitochondrion | 18.08 | 19.1 |
| Zm00001d026311_P001 | Maize | golgi, mitochondrion, plastid | 19.2 | 17.03 |
| Zm00001d002292_P004 | Maize | endoplasmic reticulum, golgi | 16.74 | 16.48 |
| Zm00001d047796_P003 | Maize | extracellular, nucleus, plasma membrane | 20.76 | 13.84 |
| Zm00001d028654_P002 | Maize | cytosol | 20.54 | 13.69 |
| Zm00001d037784_P002 | Maize | endoplasmic reticulum | 20.09 | 12.93 |
| Zm00001d017999_P002 | Maize | mitochondrion | 8.26 | 11.9 |
| Zm00001d010657_P001 | Maize | golgi, plastid, vacuole | 8.26 | 10.69 |
| Zm00001d014509_P001 | Maize | cytosol | 6.25 | 9.76 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 2.68 | 3.91 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | UniProt:A0A1D6PY90 | ProteinID:AQK51418.1 | InterPro:Epimerase_deHydtase |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 | InterPro:NAD(P)-bd_dom_sf |
| InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF7 | SUPFAM:SSF51735 |
| TMHMM:TMhelix | UniParc:UPI000843B478 | EnsemblPlantsGene:Zm00001d049804 | EnsemblPlants:Zm00001d049804_P001 | EnsemblPlants:Zm00001d049804_T001 | SEG:seg |
Description
NAD-dependent epimerase/dehydratase family protein
Coordinates
chr4:-:45379191..45380959
Molecular Weight (calculated)
47922.4 Da
IEP (calculated)
11.332
GRAVY (calculated)
-0.014
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGGVVDAAA KGVRMERHAA LLRRAAGAKQ LVSASSQLLF RATVLATLAL VVLFAVHYPS MLSRSFSLSA APASGASSSR SRHSHRSLLG SRPASRWSAA
101: WEREVRRSAA PRRDGALSVL VTGAAGFVGA HCSLALRARG DGVVGLDNFN AYYDPSLKRA RQRLLASRGV AVVDGDVNDA ALLERLLASV RFTHVLHLAA
201: QAGVRHAMRA PQAYVASNVA GLVALFEAAA RHADPQPAVV WASSSSVYGL NTQAPFSEEH RTDRPASLYA ATKKAGEAIA HAYNHIYGLS ITGLRFFTVY
301: GPWGRPDMAY FSFARSIVAG EPVTLFRAAD GSDARRDFTY IDDVVRGCLG ALDTAGRSTG SRSGRKRGPA PLRVYNLGNT SPVPVTRMVA ILEKLLGKKA
401: IKRVVTMPAN GDVPFTHANV SHAARDFGYR PATSLEAGLR HFVDWFVR
101: WEREVRRSAA PRRDGALSVL VTGAAGFVGA HCSLALRARG DGVVGLDNFN AYYDPSLKRA RQRLLASRGV AVVDGDVNDA ALLERLLASV RFTHVLHLAA
201: QAGVRHAMRA PQAYVASNVA GLVALFEAAA RHADPQPAVV WASSSSVYGL NTQAPFSEEH RTDRPASLYA ATKKAGEAIA HAYNHIYGLS ITGLRFFTVY
301: GPWGRPDMAY FSFARSIVAG EPVTLFRAAD GSDARRDFTY IDDVVRGCLG ALDTAGRSTG SRSGRKRGPA PLRVYNLGNT SPVPVTRMVA ILEKLLGKKA
401: IKRVVTMPAN GDVPFTHANV SHAARDFGYR PATSLEAGLR HFVDWFVR
001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA
Arabidopsis Description
GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.