Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 81.72 | 81.72 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 79.68 | 79.5 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 84.88 | 77.53 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 65.24 | 69.47 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 70.65 | 69.4 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 67.72 | 66.96 |
| Solyc09g092330.1.1 | Tomato | nucleus | 68.17 | 66.81 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 68.62 | 66.09 |
| CDX77481 | Canola | endoplasmic reticulum | 67.27 | 65.78 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 68.17 | 65.65 |
| CDY64583 | Canola | endoplasmic reticulum | 68.17 | 65.65 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 68.17 | 65.65 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 67.27 | 65.64 |
| KRH31569 | Soybean | mitochondrion | 68.4 | 65.58 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 64.11 | 65.44 |
| CDX85133 | Canola | endoplasmic reticulum | 67.27 | 65.35 |
| CDX92990 | Canola | endoplasmic reticulum | 67.04 | 65.13 |
| KRG97348 | Soybean | endoplasmic reticulum | 64.33 | 64.92 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 66.82 | 64.91 |
| CDY53207 | Canola | endoplasmic reticulum | 66.59 | 64.84 |
| Os08t0526100-01 | Rice | plastid | 69.3 | 64.23 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 62.53 | 63.97 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 69.07 | 63.88 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 65.46 | 63.88 |
| Zm00001d049804_P001 | Maize | plasma membrane | 64.56 | 63.84 |
| GSMUA_Achr5P25290_001 | Banana | mitochondrion | 16.7 | 63.79 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 64.11 | 63.11 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 68.17 | 62.01 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 66.59 | 61.72 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 67.04 | 61.62 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 68.62 | 61.54 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 69.07 | 61.45 |
| TraesCS7B01G153900.1 | Wheat | plastid | 68.17 | 61.38 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 66.59 | 61.33 |
| TraesCS7D01G257800.1 | Wheat | plastid | 67.49 | 61.02 |
| TraesCS7A01G256600.1 | Wheat | plastid | 67.27 | 60.82 |
| GSMUA_Achr4P17900_001 | Banana | endoplasmic reticulum, mitochondrion, peroxisome | 58.69 | 60.47 |
| GSMUA_Achr4P02040_001 | Banana | endoplasmic reticulum | 54.63 | 59.9 |
| HORVU7Hr1G053260.2 | Barley | plastid | 66.14 | 59.8 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, golgi | 54.4 | 59.51 |
| GSMUA_Achr3P04850_001 | Banana | endoplasmic reticulum | 55.08 | 58.94 |
| GSMUA_Achr9P13500_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 54.85 | 58.55 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 65.01 | 58.42 |
| HORVU5Hr1G075660.1 | Barley | plastid | 66.37 | 57.87 |
| GSMUA_Achr5P18760_001 | Banana | endoplasmic reticulum, golgi, mitochondrion | 58.69 | 56.64 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi, nucleus | 43.34 | 49.87 |
| GSMUA_Achr7P16250_001 | Banana | cytosol, endoplasmic reticulum, golgi | 55.53 | 48.14 |
| GSMUA_Achr5P04690_001 | Banana | endoplasmic reticulum, golgi, nucleus | 27.09 | 25.97 |
| GSMUA_Achr5P13620_001 | Banana | cytosol | 18.96 | 23.93 |
| GSMUA_Achr4P02670_001 | Banana | golgi | 18.51 | 23.5 |
| GSMUA_Achr9P00170_001 | Banana | extracellular, golgi | 18.51 | 23.5 |
| GSMUA_Achr6P22620_001 | Banana | golgi, mitochondrion | 18.28 | 23.21 |
| GSMUA_Achr1P18740_001 | Banana | cytosol | 18.51 | 23.16 |
| GSMUA_Achr5P09200_001 | Banana | golgi | 18.51 | 23.1 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 18.06 | 20.46 |
| GSMUA_Achr11P... | Banana | mitochondrion | 19.19 | 20.38 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 18.96 | 20.14 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 18.96 | 20.14 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 18.06 | 19.23 |
| GSMUA_Achr8P27530_001 | Banana | cytosol, golgi, plastid | 17.83 | 18.63 |
| GSMUA_Achr3P16370_001 | Banana | golgi, mitochondrion, plastid | 17.83 | 18.24 |
| GSMUA_Achr9P06140_001 | Banana | plastid | 18.51 | 15.74 |
| GSMUA_Achr6P26620_001 | Banana | plastid | 18.51 | 15.27 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 18.96 | 12.94 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 16.48 | 11.76 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 16.03 | 11.74 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 16.25 | 11.32 |
| GSMUA_Achr4P02550_001 | Banana | mitochondrion | 7.45 | 7.24 |
| GSMUA_Achr4P29070_001 | Banana | cytosol | 0.9 | 6.06 |
| GSMUA_Achr4P29060_001 | Banana | cytosol | 2.48 | 5.02 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 2.93 | 4.25 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 2.26 | 3.27 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 | EnsemblPlantsGene:GSMUA_AchrUn_randomG13630_001 | EnsemblPlants:GSMUA_AchrUn_randomP13630_001 | EnsemblPlants:GSMUA_AchrUn_randomT13630_001 |
| UniProt:M0U8X2 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PFAM:PF16363 |
| PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF10 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000295DF4B |
| SEG:seg | : | : | : | : | : |
Description
UDP-glucuronate 4-epimerase 6 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13630_001]
Coordinates
chrchrUn_random:-:64595538..64597278
Molecular Weight (calculated)
48160.7 Da
IEP (calculated)
10.138
GRAVY (calculated)
-0.149
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAPDTSKS FKLERHGGYL LRRINSTKVI AASSHLLFRA SILATVVLIL LFTLHYPPLL LYHSGAAASS AAHSNHRSLL SSAVTYGGAA WEREVRRSAT
101: PRSPSGLTVL VTGAAGFVGT HCSLALKKRG DGVVGLDNFN SYYNPSLKRA RQSLLSRHGV LVLDADINDT PLLTKLFDVV PFSHVLHLAA QAGVRYAMRN
201: PQSYPAVVWA SSSSVYGLNT ATPFSELHRT DRPASLYAAT KKAGEAIAHT YNHIYGLSIT GLRFFTVYGP WGRPDMAYFS FTNDIISGKP ITLFRMQDGA
301: AVQRDFTYID DVVKGCLGAL DTAKPSTGSG SKKRGPAQLR VYNLGNTSPV PVAKMVGILE ELLGKKAKKN VVTLPQNGDV PYTHANVSLA EKDFGYRPTT
401: DLATGLKKFV KWYVEYYGVK TGNNVHSKMK KMEEKEAEEE ASA
101: PRSPSGLTVL VTGAAGFVGT HCSLALKKRG DGVVGLDNFN SYYNPSLKRA RQSLLSRHGV LVLDADINDT PLLTKLFDVV PFSHVLHLAA QAGVRYAMRN
201: PQSYPAVVWA SSSSVYGLNT ATPFSELHRT DRPASLYAAT KKAGEAIAHT YNHIYGLSIT GLRFFTVYGP WGRPDMAYFS FTNDIISGKP ITLFRMQDGA
301: AVQRDFTYID DVVKGCLGAL DTAKPSTGSG SKKRGPAQLR VYNLGNTSPV PVAKMVGILE ELLGKKAKKN VVTLPQNGDV PYTHANVSLA EKDFGYRPTT
401: DLATGLKKFV KWYVEYYGVK TGNNVHSKMK KMEEKEAEEE ASA
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.