Factsheet for GSMUA_Achr4P02670_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	84.24	84.24
GSMUA_Achr5P09200_001	Banana	golgi	84.24	82.82
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	82.52	82.52
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	77.08	77.3
Bra019257.1-P	Field mustard	plastid	76.79	77.01
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	76.79	77.01
Bra027732.1-P	Field mustard	golgi	75.36	76.68
CDY47846	Canola	golgi	75.36	76.68
CDY08378	Canola	golgi	75.36	76.23
AT1G64440.1	Thale cress	cytosol, golgi	75.93	76.15
CDY03506	Canola	cytosol, golgi	75.64	75.86
CDY47611	Canola	golgi	75.64	75.86
AT4G10960.1	Thale cress	golgi	76.22	75.78
Bra013744.1-P	Field mustard	cytosol, golgi	75.36	75.57
AT4G23920.1	Thale cress	cytosol	75.64	75.43
CDY50431	Canola	cytosol	74.79	75.0
CDY40862	Canola	cytosol, golgi	73.07	73.49
CDX86828	Canola	golgi	73.07	73.49
Bra035262.1-P	Field mustard	golgi	73.07	73.49
Os09t0323000-01	Rice	cytosol	76.22	72.09
HORVU5Hr1G055920.8	Barley	plastid	76.79	71.66
TraesCS5D01G188200.1	Wheat	plastid	76.5	71.2
TraesCS5B01G181300.1	Wheat	plastid	76.5	71.2
TraesCS5A01G183100.1	Wheat	plastid	76.5	71.2
EER98731	Sorghum	plastid	73.07	69.67
Zm00001d005598_P001	Maize	plastid	72.49	69.32
GSMUA_Achr5P13620_001	Banana	cytosol	67.34	66.95
GSMUA_Achr1P18740_001	Banana	cytosol	67.34	66.38
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	80.52	66.27
Os08t0374800-01	Rice	golgi	77.08	65.93
Zm00001d020093_P002	Maize	golgi	57.02	65.89
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	79.94	64.43
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	77.65	64.07
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	77.36	63.83
GSMUA_Achr9P06140_001	Banana	plastid	82.52	55.28
GSMUA_Achr6P26620_001	Banana	plastid	82.52	53.63
GSMUA_Achr11P...	Banana	cytosol, golgi	44.41	39.64
GSMUA_Achr11P...	Banana	mitochondrion	44.13	36.93
GSMUA_Achr8P33320_001	Banana	mitochondrion	44.13	36.93
GSMUA_Achr4P31860_001	Banana	mitochondrion	43.55	36.54
GSMUA_Achr3P23390_001	Banana	mitochondrion	43.27	36.21
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	25.21	21.26
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	24.36	21.04
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	24.36	20.99
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	24.64	20.72
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	26.36	20.04
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	24.64	20.0
GSMUA_Achr5P25290_001	Banana	mitochondrion	6.59	19.83
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	24.64	19.41
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	23.5	18.51
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	23.21	18.24
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	19.48	17.66
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	24.07	17.32
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	24.93	17.03
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	26.65	14.33
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	16.91	12.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	22.92	12.58
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	22.06	12.4
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	21.2	12.23
GSMUA_Achr4P29070_001	Banana	cytosol	1.43	7.58
GSMUA_Achr4P02550_001	Banana	mitochondrion	9.46	7.24
GSMUA_Achr4P29060_001	Banana	cytosol	2.29	3.65
GSMUA_Achr5P10430_001	Banana	cytosol	3.15	3.59
GSMUA_Achr1P03840_001	Banana	cytosol	2.87	3.27

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr4G02670_001	EnsemblPlants:GSMUA_Achr4P02670_001	EnsemblPlants:GSMUA_Achr4T02670_001	UniProt:M0SKI4	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF5	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI0002953A6E	:	:	:	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr4G02670_001]

Coordinates

chr4:+:2257639..2263406

Molecular Weight (calculated)

38400.3 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.207

Length

349 amino acids

Sequence
(BLAST)

001: MARRILVTGG AGYIGSHTVL QLLLAGFGVV VVDNLDNSSE VAVERVTALA GKYGKNLTFH RIDLRDKDAL DKLFASTKFD AVVHFAGLKA VGESVQKPLL
101: YYNNNIIGTI ALLEAMVRHG CKKLVFSSSA TVYGWPKKVP CTEESPLCAM NPYGRTKLMI EDICRDIHRA DKDWNIILLR YFNPIGAHPS GNIGEDPRGF
201: PNNLMPFVQQ VAVGRRPALT VFGNDYSTKD GTGVRDYIHV VDLADGHIAA LQKLFKSSNL GCEVYNLGTG KGTSVLEMVA AFEKTSGKKI PVVKAGRRPG
301: DAEILYASTR KAEKELKWKA KYGIEEMCRD QWNWAKKNPW GYGSPDSTS

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.