CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
endoplasmic reticulum 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98731
EES14924
KXG36042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	KXG36042	AT1G12780.1	21798944
AT4G23920.1	EER98731	AT4G10960.1	21798944
AT4G23920.1	EES14924	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005598_P001	Maize	plastid	96.72	96.99
Zm00001d020093_P002	Maize	golgi	74.59	90.4
Os09t0323000-01	Rice	cytosol	84.97	84.28
TraesCS5D01G188200.1	Wheat	plastid	83.61	81.6
HORVU5Hr1G055920.8	Barley	plastid	83.33	81.55
TraesCS5B01G181300.1	Wheat	plastid	83.33	81.33
TraesCS5A01G183100.1	Wheat	plastid	83.33	81.33
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	70.49	73.93
GSMUA_Achr4P02670_001	Banana	golgi	69.67	73.07
EER94859	Sorghum	extracellular, golgi	70.22	72.39
GSMUA_Achr5P09200_001	Banana	golgi	69.67	71.83
AT4G10960.1	Thale cress	golgi	68.58	71.51
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	68.03	71.35
Bra019257.1-P	Field mustard	plastid	67.76	71.26
CDY47611	Canola	golgi	67.49	70.98
CDY03506	Canola	cytosol, golgi	67.49	70.98
CDY50431	Canola	cytosol	67.21	70.69
Bra013744.1-P	Field mustard	cytosol, golgi	67.21	70.69
CDY40862	Canola	cytosol, golgi	66.67	70.32
AT4G23920.1	Thale cress	cytosol	67.21	70.29
Bra035262.1-P	Field mustard	golgi	66.39	70.03
CDX86828	Canola	golgi	66.39	70.03
CDY47846	Canola	golgi	65.57	69.97
Bra027732.1-P	Field mustard	golgi	65.57	69.97
CDY08378	Canola	golgi	65.57	69.57
AT1G64440.1	Thale cress	cytosol, golgi	66.12	69.54
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	65.85	69.25
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	65.85	69.25
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	78.69	68.09
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	70.49	60.85
KXG36042	Sorghum	cytosol	58.47	58.79
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	69.4	58.66
GSMUA_Achr9P06140_001	Banana	plastid	69.95	49.14
GSMUA_Achr6P26620_001	Banana	plastid	70.77	48.23
EER95001	Sorghum	mitochondrion	39.62	35.63
EER95854	Sorghum	mitochondrion, plastid	40.71	34.65
KXG27129	Sorghum	mitochondrion, plastid	38.52	33.98
OQU75981	Sorghum	endoplasmic reticulum	24.59	20.45
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	24.32	20.27
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	26.23	20.04
EER95171	Sorghum	plastid	25.41	19.38
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	25.68	19.03
EER95086	Sorghum	cytosol, mitochondrion, plastid	24.86	13.54
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	24.32	13.24
KXG21627	Sorghum	mitochondrion	22.95	12.24
EES07456	Sorghum	cytosol, peroxisome, plastid	2.46	2.93

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:8054550
UniProt:C5X9S7	EnsemblPlants:EER98731	ProteinID:EER98731	ProteinID:EER98731.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF1	MetaCyc:PWY-3821
MetaCyc:PWY-6317	MetaCyc:PWY-6397	MetaCyc:PWY-6527	MetaCyc:PWY-7328	MetaCyc:PWY-7344	EnsemblPlantsGene:SORBI_3002G170100
SUPFAM:SSF51735	unigene:Sbi.5647	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI0001A83D59	RefSeq:XP_002462210.1

Description

hypothetical protein

Coordinates

chr2:-:53883614..53890019

Molecular Weight (calculated)

39766.5 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.165

Length

366 amino acids

Sequence
(BLAST)

001: MSAAKEAGPS SRAVLVTGGA GYIGSHAVLQ LLTAGFRVVV LDSLANSSEL VIRRLRSLAG PDNAKNLAFH KVDIRDKDGL EKVFASTRFD AVIHFAGLKA
101: VGESVQKPLL YYDHNVVGTI NLLEVMAAHG CKKLVFSSSA AVYGSPKNSP CTEDFPLTPH NPYGRTKLMA EEICRDIYHS DPEWNIILLR YFNPVGAHPS
201: GYLGEDPCGT PNNLMPFVQQ IAVGRRPSLT IFGNNYATKD GTGVRDYIHV VDLAEGHLFA LRKLFESSSN IGCEAYNLGT GKGTSVLEIV NAFEKASGKK
301: IPLVMGQRRP GDAEILFSSP AKAERELHWK AKYGITEMCR DLWNWASKSP YGYAASESPK LNGSSC

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.