CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 3
peroxisome 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017601_P001	Maize	extracellular, peroxisome	94.46	94.46
TraesCS6D01G238800.1	Wheat	peroxisome	88.93	91.0
TraesCS6A01G257500.1	Wheat	peroxisome	88.6	90.67
TraesCS6B01G267600.1	Wheat	peroxisome	88.27	90.33
GSMUA_Achr5P10430_001	Banana	cytosol	87.62	87.91
GSMUA_Achr1P03840_001	Banana	cytosol	86.32	86.6
Os02t0678400-01	Rice	plasma membrane	87.3	86.17
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	87.62	84.33
CDY45969	Canola	cytosol	80.46	83.17
VIT_02s0025g04610.t01	Wine grape	cytosol	81.76	83.11
Bra027005.1-P	Field mustard	cytosol	80.13	82.83
CDY45471	Canola	cytosol	79.8	82.49
AT1G63000.1	Thale cress	cytosol	79.8	81.4
PGSC0003DMT400058533	Potato	cytosol	79.48	81.06
Solyc08g080140.2.1	Tomato	extracellular	78.18	79.73
KRH77471	Soybean	cytosol, endoplasmic reticulum	71.01	78.42
CDY57072	Canola	cytosol, extracellular, peroxisome	82.08	78.02
Bra019776.1-P	Field mustard	cytosol	81.43	77.88
CDX98052	Canola	cytosol	78.83	74.92
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	76.22	34.82
EER95086	Sorghum	cytosol, mitochondrion, plastid	75.57	34.52
KXG21627	Sorghum	mitochondrion	75.57	33.82
EER94859	Sorghum	extracellular, golgi	3.91	3.38
KXG36042	Sorghum	cytosol	3.91	3.3
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	4.89	3.13
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	4.23	2.96
OQU75981	Sorghum	endoplasmic reticulum	4.23	2.95
EER95001	Sorghum	mitochondrion	3.91	2.95
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	4.56	2.83
EER95171	Sorghum	plastid	4.23	2.71
KXG27129	Sorghum	mitochondrion, plastid	3.58	2.65
EER98731	Sorghum	plastid	2.93	2.46
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	3.26	2.36
EER95854	Sorghum	mitochondrion, plastid	3.26	2.33

Protein Annotations

MapMan:3.13.6.1	Gene3D:3.40.50.720	EntrezGene:8073218	UniProt:C5Y0Z4	EnsemblPlants:EES07456	ProteinID:EES07456
ProteinID:EES07456.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008830	GO:GO:0008831	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987
GO:GO:0010253	GO:GO:0016020	GO:GO:0019305	GO:GO:0048046	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf
PFAM:PF04321	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	InterPro:RmlD-like-bd	EnsemblPlantsGene:SORBI_3004G282700	SUPFAM:SSF51735
unigene:Sbi.8150	UniParc:UPI0001A8627E	RefSeq:XP_002454480.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:62454702..62458057

Molecular Weight (calculated)

33845.5 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.179

Length

307 amino acids

Sequence
(BLAST)

001: MGAATTNGSA DPAPAPVPAL KFLIYGRTGW IGGLLGGLCA ARGIPFAYGA GRLESRASLE ADIDAASPTH VFNAAGVTGR PNVDWCETHR AETIRANVVG
101: TLTLADVCRG RGLVLINYAT GCIFEYDEGH PLGSGLGFKE EDTPNFVGSF YSKTKAMVEE LLKNYENVCT LRVRMPISSD LSNPRNFITK ITRYDKVVNI
201: PNSMTILDEL LPISIEMAKR NLTGIWNFTN PGVVSHNEIL EMYRDYIDPS FSWKNFNLEE QAKVIVAPRS NNELDQTKLK REFPELLSIK ESLIKYVFEP
301: NCKTSKA

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.